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TUBG2 (tubulin gamma 2)

Identity

Alias_namestubulin
Other alias-
HGNC (Hugo) TUBG2
LocusID (NCBI) 27175
Atlas_Id 52960
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42659248 and ends at 42667006 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TUBG2 (17q21.2) / TUBB4A (19p13.3)USP40 (2q37.1) / TUBG2 (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBG2   12419
Cards
Entrez_Gene (NCBI)TUBG2  27175  tubulin gamma 2
Aliases
GeneCards (Weizmann)TUBG2
Ensembl hg19 (Hinxton)ENSG00000037042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000037042 [Gene_View]  chr17:42659248-42667006 [Contig_View]  TUBG2 [Vega]
ICGC DataPortalENSG00000037042
TCGA cBioPortalTUBG2
AceView (NCBI)TUBG2
Genatlas (Paris)TUBG2
WikiGenes27175
SOURCE (Princeton)TUBG2
Genetics Home Reference (NIH)TUBG2
Genomic and cartography
GoldenPath hg38 (UCSC)TUBG2  -     chr17:42659248-42667006 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBG2  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblTUBG2 - 17q21.2 [CytoView hg19]  TUBG2 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBITUBG2 [Mapview hg19]  TUBG2 [Mapview hg38]
OMIM605785   
Gene and transcription
Genbank (Entrez)AF225971 AK022324 AK225134 AK310562 BC009670
RefSeq transcript (Entrez)NM_001320509 NM_016437
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBG2
Cluster EST : UnigeneHs.708059 [ NCBI ]
CGAP (NCI)Hs.708059
Alternative Splicing GalleryENSG00000037042
Gene ExpressionTUBG2 [ NCBI-GEO ]   TUBG2 [ EBI - ARRAY_EXPRESS ]   TUBG2 [ SEEK ]   TUBG2 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27175
GTEX Portal (Tissue expression)TUBG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRH3
Splice isoforms : SwissVarQ9NRH3
PhosPhoSitePlusQ9NRH3
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Gamma_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBG2
DMDM Disease mutations27175
Blocks (Seattle)TUBG2
SuperfamilyQ9NRH3
Human Protein AtlasENSG00000037042
Peptide AtlasQ9NRH3
HPRD05778
IPIIPI00299830   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRH3
IntAct (EBI)Q9NRH3
FunCoupENSG00000037042
BioGRIDTUBG2
STRING (EMBL)TUBG2
ZODIACTUBG2
Ontologies - Pathways
QuickGOQ9NRH3
Ontology : AmiGOpericentriolar material  gamma-tubulin complex  GTPase activity  structural molecule activity  GTP binding  cytosol  microtubule  spindle microtubule  cytoplasmic microtubule  microtubule nucleation  microtubule cytoskeleton  cytoplasmic microtubule organization  
Ontology : EGO-EBIpericentriolar material  gamma-tubulin complex  GTPase activity  structural molecule activity  GTP binding  cytosol  microtubule  spindle microtubule  cytoplasmic microtubule  microtubule nucleation  microtubule cytoskeleton  cytoplasmic microtubule organization  
NDEx NetworkTUBG2
Atlas of Cancer Signalling NetworkTUBG2
Wikipedia pathwaysTUBG2
Orthology - Evolution
OrthoDB27175
GeneTree (enSembl)ENSG00000037042
Phylogenetic Trees/Animal Genes : TreeFamTUBG2
HOVERGENQ9NRH3
HOGENOMQ9NRH3
Homologs : HomoloGeneTUBG2
Homology/Alignments : Family Browser (UCSC)TUBG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBG2
dbVarTUBG2
ClinVarTUBG2
1000_GenomesTUBG2 
Exome Variant ServerTUBG2
ExAC (Exome Aggregation Consortium)TUBG2 (select the gene name)
Genetic variants : HAPMAP27175
Genomic Variants (DGV)TUBG2 [DGVbeta]
DECIPHERTUBG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBG2 
Mutations
ICGC Data PortalTUBG2 
TCGA Data PortalTUBG2 
Broad Tumor PortalTUBG2
OASIS PortalTUBG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBG2
DgiDB (Drug Gene Interaction Database)TUBG2
DoCM (Curated mutations)TUBG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBG2 (select a term)
intoGenTUBG2
Cancer3DTUBG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605785   
Orphanet
MedgenTUBG2
Genetic Testing Registry TUBG2
NextProtQ9NRH3 [Medical]
TSGene27175
GENETestsTUBG2
Target ValidationTUBG2
Huge Navigator TUBG2 [HugePedia]
snp3D : Map Gene to Disease27175
BioCentury BCIQTUBG2
ClinGenTUBG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27175
Chemical/Pharm GKB GenePA37081
Clinical trialTUBG2
Miscellaneous
canSAR (ICR)TUBG2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBG2
EVEXTUBG2
GoPubMedTUBG2
iHOPTUBG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:18:00 CEST 2017

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