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TUBGCP3 (tubulin gamma complex associated protein 3)

Identity

Alias_namestubulin
Alias_symbol (synonym)GCP3
Spc98p
SPBC98
Other alias104p
Grip104
Spc98
HGNC (Hugo) TUBGCP3
LocusID (NCBI) 10426
Atlas_Id 54738
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 112485005 and ends at 112588185 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP11A (13q34) / TUBGCP3 (13q34)NDE1 (16p13.11) / TUBGCP3 (13q34)RAP1B (12q15) / TUBGCP3 (13q34)
TUBGCP3 (13q34) / ATP11A (13q34)TUBGCP3 (13q34) / FARP1 (13q32.2)TUBGCP3 (13q34) / GNAS (20q13.32)
TUBGCP3 (13q34) / PDS5B (13q13.1)TUBGCP3 (13q34) / PLA2G1B (12q24.31)TUBGCP3 (13q34) / TFDP1 (13q34)
USP34 (2p15) / TUBGCP3 (13q34)ATP11A 13q34 / TUBGCP3 13q34TUBGCP3 13q34 / ATP11A 13q34
TUBGCP3 13q34 / FARP1 13q32.2TUBGCP3 13q34 / TFDP1 13q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBGCP3   18598
Cards
Entrez_Gene (NCBI)TUBGCP3  10426  tubulin gamma complex associated protein 3
Aliases104p; GCP3; Grip104; SPBC98; 
Spc98; Spc98p
GeneCards (Weizmann)TUBGCP3
Ensembl hg19 (Hinxton)ENSG00000126216 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126216 [Gene_View]  chr13:112485005-112588185 [Contig_View]  TUBGCP3 [Vega]
ICGC DataPortalENSG00000126216
TCGA cBioPortalTUBGCP3
AceView (NCBI)TUBGCP3
Genatlas (Paris)TUBGCP3
WikiGenes10426
SOURCE (Princeton)TUBGCP3
Genetics Home Reference (NIH)TUBGCP3
Genomic and cartography
GoldenPath hg38 (UCSC)TUBGCP3  -     chr13:112485005-112588185 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBGCP3  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblTUBGCP3 - 13q34 [CytoView hg19]  TUBGCP3 - 13q34 [CytoView hg38]
Mapping of homologs : NCBITUBGCP3 [Mapview hg19]  TUBGCP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA720688 AF042378 AJ003061 AJ003062 AK302537
RefSeq transcript (Entrez)NM_001286277 NM_001286278 NM_001286279 NM_006322
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_187592
Consensus coding sequences : CCDS (NCBI)TUBGCP3
Cluster EST : UnigeneHs.224152 [ NCBI ]
CGAP (NCI)Hs.224152
Alternative Splicing GalleryENSG00000126216
Gene ExpressionTUBGCP3 [ NCBI-GEO ]   TUBGCP3 [ EBI - ARRAY_EXPRESS ]   TUBGCP3 [ SEEK ]   TUBGCP3 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBGCP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10426
GTEX Portal (Tissue expression)TUBGCP3
Human Protein AtlasENSG00000126216-TUBGCP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CW5
Splice isoforms : SwissVarQ96CW5
PhosPhoSitePlusQ96CW5
Domains : Interpro (EBI)GCP   
Domain families : Pfam (Sanger)Spc97_Spc98 (PF04130)   
Domain families : Pfam (NCBI)pfam04130   
Conserved Domain (NCBI)TUBGCP3
DMDM Disease mutations10426
Blocks (Seattle)TUBGCP3
SuperfamilyQ96CW5
Human Protein Atlas [tissue]ENSG00000126216-TUBGCP3 [tissue]
Peptide AtlasQ96CW5
HPRD10289
IPIIPI00033516   IPI00399300   IPI00221175   
Protein Interaction databases
DIP (DOE-UCLA)Q96CW5
IntAct (EBI)Q96CW5
FunCoupENSG00000126216
BioGRIDTUBGCP3
STRING (EMBL)TUBGCP3
ZODIACTUBGCP3
Ontologies - Pathways
QuickGOQ96CW5
Ontology : AmiGOequatorial microtubule organizing center  structural molecule activity  structural constituent of cytoskeleton  structural constituent of cytoskeleton  protein binding  cytoplasm  centrosome  centrosome  centriole  spindle pole body  spindle  polar microtubule  cytosol  microtubule nucleation  single fertilization  gamma-tubulin small complex  membrane  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  centrosome duplication  interphase microtubule nucleation by interphase microtubule organizing center  mitotic spindle assembly  
Ontology : EGO-EBIequatorial microtubule organizing center  structural molecule activity  structural constituent of cytoskeleton  structural constituent of cytoskeleton  protein binding  cytoplasm  centrosome  centrosome  centriole  spindle pole body  spindle  polar microtubule  cytosol  microtubule nucleation  single fertilization  gamma-tubulin small complex  membrane  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  centrosome duplication  interphase microtubule nucleation by interphase microtubule organizing center  mitotic spindle assembly  
NDEx NetworkTUBGCP3
Atlas of Cancer Signalling NetworkTUBGCP3
Wikipedia pathwaysTUBGCP3
Orthology - Evolution
OrthoDB10426
GeneTree (enSembl)ENSG00000126216
Phylogenetic Trees/Animal Genes : TreeFamTUBGCP3
HOVERGENQ96CW5
HOGENOMQ96CW5
Homologs : HomoloGeneTUBGCP3
Homology/Alignments : Family Browser (UCSC)TUBGCP3
Gene fusions - Rearrangements
Fusion : MitelmanTUBGCP3/FARP1 [13q34/13q32.2]  
Fusion : MitelmanTUBGCP3/PDS5B [13q34/13q13.1]  [inv(13)(q13q34)]  
Fusion: TCGA_MDACCATP11A 13q34 TUBGCP3 13q34 BRCA
Fusion: TCGA_MDACCTUBGCP3 13q34 ATP11A 13q34 LUAD
Fusion: TCGA_MDACCTUBGCP3 13q34 FARP1 13q32.2 BRCA
Fusion: TCGA_MDACCTUBGCP3 13q34 TFDP1 13q34 HNSC
Tumor Fusion PortalTUBGCP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBGCP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBGCP3
dbVarTUBGCP3
ClinVarTUBGCP3
1000_GenomesTUBGCP3 
Exome Variant ServerTUBGCP3
ExAC (Exome Aggregation Consortium)ENSG00000126216
GNOMAD BrowserENSG00000126216
Genetic variants : HAPMAP10426
Genomic Variants (DGV)TUBGCP3 [DGVbeta]
DECIPHERTUBGCP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBGCP3 
Mutations
ICGC Data PortalTUBGCP3 
TCGA Data PortalTUBGCP3 
Broad Tumor PortalTUBGCP3
OASIS PortalTUBGCP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBGCP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBGCP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBGCP3
DgiDB (Drug Gene Interaction Database)TUBGCP3
DoCM (Curated mutations)TUBGCP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBGCP3 (select a term)
intoGenTUBGCP3
Cancer3DTUBGCP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTUBGCP3
MedgenTUBGCP3
Genetic Testing Registry TUBGCP3
NextProtQ96CW5 [Medical]
TSGene10426
GENETestsTUBGCP3
Target ValidationTUBGCP3
Huge Navigator TUBGCP3 [HugePedia]
snp3D : Map Gene to Disease10426
BioCentury BCIQTUBGCP3
ClinGenTUBGCP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10426
Chemical/Pharm GKB GenePA38597
Clinical trialTUBGCP3
Miscellaneous
canSAR (ICR)TUBGCP3 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBGCP3
EVEXTUBGCP3
GoPubMedTUBGCP3
iHOPTUBGCP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:40:13 CET 2017

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