Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TUBGCP4 (tubulin gamma complex associated protein 4)

Identity

Alias_namestubulin, gamma complex associated protein 4
Alias_symbol (synonym)76P
FLJ14797
Other aliasGCP-4
GCP4
Grip76
MCCRP3
HGNC (Hugo) TUBGCP4
LocusID (NCBI) 27229
Atlas_Id 75373
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43371059 and ends at 43407096 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDXDC1 (16p13.11) / TUBGCP4 (15q15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBGCP4   16691
Cards
Entrez_Gene (NCBI)TUBGCP4  27229  tubulin gamma complex associated protein 4
Aliases76P; GCP-4; GCP4; Grip76; 
MCCRP3
GeneCards (Weizmann)TUBGCP4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:43371059-43407096 [Contig_View]  TUBGCP4 [Vega]
TCGA cBioPortalTUBGCP4
AceView (NCBI)TUBGCP4
Genatlas (Paris)TUBGCP4
WikiGenes27229
SOURCE (Princeton)TUBGCP4
Genetics Home Reference (NIH)TUBGCP4
Genomic and cartography
GoldenPath hg38 (UCSC)TUBGCP4  -     chr15:43371059-43407096 +  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBGCP4  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblTUBGCP4 - 15q15.3 [CytoView hg19]  TUBGCP4 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBITUBGCP4 [Mapview hg19]  TUBGCP4 [Mapview hg38]
OMIM609610   616335   
Gene and transcription
Genbank (Entrez)AJ249677 AK001639 AK026551 AK027703 AK127306
RefSeq transcript (Entrez)NM_001286414 NM_014444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBGCP4
Cluster EST : UnigeneHs.598799 [ NCBI ]
CGAP (NCI)Hs.598799
Gene ExpressionTUBGCP4 [ NCBI-GEO ]   TUBGCP4 [ EBI - ARRAY_EXPRESS ]   TUBGCP4 [ SEEK ]   TUBGCP4 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBGCP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27229
GTEX Portal (Tissue expression)TUBGCP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGJ1
Splice isoforms : SwissVarQ9UGJ1
PhosPhoSitePlusQ9UGJ1
Domains : Interpro (EBI)GCP   
Domain families : Pfam (Sanger)Spc97_Spc98 (PF04130)   
Domain families : Pfam (NCBI)pfam04130   
Conserved Domain (NCBI)TUBGCP4
DMDM Disease mutations27229
Blocks (Seattle)TUBGCP4
PDB (SRS)3RIP   
PDB (PDBSum)3RIP   
PDB (IMB)3RIP   
PDB (RSDB)3RIP   
Structural Biology KnowledgeBase3RIP   
SCOP (Structural Classification of Proteins)3RIP   
CATH (Classification of proteins structures)3RIP   
SuperfamilyQ9UGJ1
Peptide AtlasQ9UGJ1
HPRD10616
IPIIPI00004389   IPI00793078   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGJ1
IntAct (EBI)Q9UGJ1
BioGRIDTUBGCP4
STRING (EMBL)TUBGCP4
ZODIACTUBGCP4
Ontologies - Pathways
QuickGOQ9UGJ1
Ontology : AmiGOspindle pole  equatorial microtubule organizing center  gamma-tubulin complex  structural constituent of cytoskeleton  structural constituent of cytoskeleton  protein binding  centrosome  spindle pole body  cytosol  microtubule  protein complex assembly  microtubule nucleation  gamma-tubulin ring complex  microtubule cytoskeleton  membrane  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  centrosome duplication  interphase microtubule nucleation by interphase microtubule organizing center  recycling endosome  mitotic spindle assembly  
Ontology : EGO-EBIspindle pole  equatorial microtubule organizing center  gamma-tubulin complex  structural constituent of cytoskeleton  structural constituent of cytoskeleton  protein binding  centrosome  spindle pole body  cytosol  microtubule  protein complex assembly  microtubule nucleation  gamma-tubulin ring complex  microtubule cytoskeleton  membrane  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  centrosome duplication  interphase microtubule nucleation by interphase microtubule organizing center  recycling endosome  mitotic spindle assembly  
NDEx NetworkTUBGCP4
Atlas of Cancer Signalling NetworkTUBGCP4
Wikipedia pathwaysTUBGCP4
Orthology - Evolution
OrthoDB27229
Phylogenetic Trees/Animal Genes : TreeFamTUBGCP4
HOVERGENQ9UGJ1
HOGENOMQ9UGJ1
Homologs : HomoloGeneTUBGCP4
Homology/Alignments : Family Browser (UCSC)TUBGCP4
Gene fusions - Rearrangements
Tumor Fusion PortalTUBGCP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBGCP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBGCP4
dbVarTUBGCP4
ClinVarTUBGCP4
1000_GenomesTUBGCP4 
Exome Variant ServerTUBGCP4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP27229
Genomic Variants (DGV)TUBGCP4 [DGVbeta]
DECIPHERTUBGCP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBGCP4 
Mutations
ICGC Data PortalTUBGCP4 
TCGA Data PortalTUBGCP4 
Broad Tumor PortalTUBGCP4
OASIS PortalTUBGCP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBGCP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBGCP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBGCP4
DgiDB (Drug Gene Interaction Database)TUBGCP4
DoCM (Curated mutations)TUBGCP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBGCP4 (select a term)
intoGenTUBGCP4
Cancer3DTUBGCP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609610    616335   
Orphanet2329   
DisGeNETTUBGCP4
MedgenTUBGCP4
Genetic Testing Registry TUBGCP4
NextProtQ9UGJ1 [Medical]
TSGene27229
GENETestsTUBGCP4
Target ValidationTUBGCP4
Huge Navigator TUBGCP4 [HugePedia]
snp3D : Map Gene to Disease27229
BioCentury BCIQTUBGCP4
ClinGenTUBGCP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27229
Chemical/Pharm GKB GenePA162407404
Clinical trialTUBGCP4
Miscellaneous
canSAR (ICR)TUBGCP4 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBGCP4
EVEXTUBGCP4
GoPubMedTUBGCP4
iHOPTUBGCP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:32:39 CET 2017

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