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TUBGCP5 (tubulin gamma complex associated protein 5)

Identity

Alias_namestubulin, gamma complex associated protein 5
Alias_symbol (synonym)GCP5
KIAA1899
Other alias
HGNC (Hugo) TUBGCP5
LocusID (NCBI) 114791
Atlas_Id 75374
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 23000285 and ends at 23039673 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADGRB3 (6q12) / TUBGCP5 (15q11.2)CYFIP1 (15q11.2) / TUBGCP5 (15q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBGCP5   18600
Cards
Entrez_Gene (NCBI)TUBGCP5  114791  tubulin gamma complex associated protein 5
AliasesGCP5
GeneCards (Weizmann)TUBGCP5
Ensembl hg19 (Hinxton)ENSG00000275835 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275835 [Gene_View]  chr15:23000285-23039673 [Contig_View]  TUBGCP5 [Vega]
ICGC DataPortalENSG00000275835
TCGA cBioPortalTUBGCP5
AceView (NCBI)TUBGCP5
Genatlas (Paris)TUBGCP5
WikiGenes114791
SOURCE (Princeton)TUBGCP5
Genetics Home Reference (NIH)TUBGCP5
Genomic and cartography
GoldenPath hg38 (UCSC)TUBGCP5  -     chr15:23000285-23039673 -  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBGCP5  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblTUBGCP5 - 15q11.2 [CytoView hg19]  TUBGCP5 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBITUBGCP5 [Mapview hg19]  TUBGCP5 [Mapview hg38]
OMIM608147   
Gene and transcription
Genbank (Entrez)AB067486 AF272884 AK023934 AK056416 AK289859
RefSeq transcript (Entrez)NM_001102610 NM_052903
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187603 NT_187659
Consensus coding sequences : CCDS (NCBI)TUBGCP5
Cluster EST : UnigeneHs.533898 [ NCBI ]
CGAP (NCI)Hs.533898
Alternative Splicing GalleryENSG00000275835
Gene ExpressionTUBGCP5 [ NCBI-GEO ]   TUBGCP5 [ EBI - ARRAY_EXPRESS ]   TUBGCP5 [ SEEK ]   TUBGCP5 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBGCP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114791
GTEX Portal (Tissue expression)TUBGCP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RT8
Splice isoforms : SwissVarQ96RT8
PhosPhoSitePlusQ96RT8
Domains : Interpro (EBI)GCP   
Domain families : Pfam (Sanger)Spc97_Spc98 (PF04130)   
Domain families : Pfam (NCBI)pfam04130   
Conserved Domain (NCBI)TUBGCP5
DMDM Disease mutations114791
Blocks (Seattle)TUBGCP5
SuperfamilyQ96RT8
Human Protein AtlasENSG00000275835
Peptide AtlasQ96RT8
HPRD12177
IPIIPI00045492   IPI00856117   
Protein Interaction databases
DIP (DOE-UCLA)Q96RT8
IntAct (EBI)Q96RT8
FunCoupENSG00000275835
BioGRIDTUBGCP5
STRING (EMBL)TUBGCP5
ZODIACTUBGCP5
Ontologies - Pathways
QuickGOQ96RT8
Ontology : AmiGOspindle pole  equatorial microtubule organizing center  structural constituent of cytoskeleton  centrosome  spindle pole body  cytosol  cytosol  microtubule  microtubule nucleation  microtubule binding  gamma-tubulin ring complex  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  centrosome duplication  interphase microtubule nucleation by interphase microtubule organizing center  mitotic spindle assembly  
Ontology : EGO-EBIspindle pole  equatorial microtubule organizing center  structural constituent of cytoskeleton  centrosome  spindle pole body  cytosol  cytosol  microtubule  microtubule nucleation  microtubule binding  gamma-tubulin ring complex  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  centrosome duplication  interphase microtubule nucleation by interphase microtubule organizing center  mitotic spindle assembly  
NDEx NetworkTUBGCP5
Atlas of Cancer Signalling NetworkTUBGCP5
Wikipedia pathwaysTUBGCP5
Orthology - Evolution
OrthoDB114791
GeneTree (enSembl)ENSG00000275835
Phylogenetic Trees/Animal Genes : TreeFamTUBGCP5
HOVERGENQ96RT8
HOGENOMQ96RT8
Homologs : HomoloGeneTUBGCP5
Homology/Alignments : Family Browser (UCSC)TUBGCP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBGCP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBGCP5
dbVarTUBGCP5
ClinVarTUBGCP5
1000_GenomesTUBGCP5 
Exome Variant ServerTUBGCP5
ExAC (Exome Aggregation Consortium)TUBGCP5 (select the gene name)
Genetic variants : HAPMAP114791
Genomic Variants (DGV)TUBGCP5 [DGVbeta]
DECIPHERTUBGCP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBGCP5 
Mutations
ICGC Data PortalTUBGCP5 
TCGA Data PortalTUBGCP5 
Broad Tumor PortalTUBGCP5
OASIS PortalTUBGCP5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTUBGCP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBGCP5
DgiDB (Drug Gene Interaction Database)TUBGCP5
DoCM (Curated mutations)TUBGCP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBGCP5 (select a term)
intoGenTUBGCP5
Cancer3DTUBGCP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608147   
Orphanet
MedgenTUBGCP5
Genetic Testing Registry TUBGCP5
NextProtQ96RT8 [Medical]
TSGene114791
GENETestsTUBGCP5
Target ValidationTUBGCP5
Huge Navigator TUBGCP5 [HugePedia]
snp3D : Map Gene to Disease114791
BioCentury BCIQTUBGCP5
ClinGenTUBGCP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114791
Chemical/Pharm GKB GenePA38599
Clinical trialTUBGCP5
Miscellaneous
canSAR (ICR)TUBGCP5 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBGCP5
EVEXTUBGCP5
GoPubMedTUBGCP5
iHOPTUBGCP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:50 CEST 2017

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