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TUBGCP6 (tubulin gamma complex associated protein 6)

Identity

Alias (NCBI)GCP-6
GCP6
MCCRP
MCCRP1
MCPHCR
HGNC (Hugo) TUBGCP6
HGNC Alias symbGCP6
KIAA1669
DJ402G11.6
HGNC Alias namegamma-tubulin complex component 6
HGNC Previous nametubulin, gamma complex associated protein 6
LocusID (NCBI) 85378
Atlas_Id 75375
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50217694 and ends at 50245023 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TUBGCP6   18127
Cards
Entrez_Gene (NCBI)TUBGCP6    tubulin gamma complex associated protein 6
AliasesGCP-6; GCP6; MCCRP; MCCRP1; 
MCPHCR
GeneCards (Weizmann)TUBGCP6
Ensembl hg19 (Hinxton)ENSG00000128159 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128159 [Gene_View]  ENSG00000128159 [Sequence]  chr22:50217694-50245023 [Contig_View]  TUBGCP6 [Vega]
ICGC DataPortalENSG00000128159
TCGA cBioPortalTUBGCP6
AceView (NCBI)TUBGCP6
Genatlas (Paris)TUBGCP6
SOURCE (Princeton)TUBGCP6
Genetics Home Reference (NIH)TUBGCP6
Genomic and cartography
GoldenPath hg38 (UCSC)TUBGCP6  -     chr22:50217694-50245023 -  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBGCP6  -     22q13.33   [Description]    (hg19-Feb_2009)
GoldenPathTUBGCP6 - 22q13.33 [CytoView hg19]  TUBGCP6 - 22q13.33 [CytoView hg38]
ImmunoBaseENSG00000128159
Genome Data Viewer NCBITUBGCP6 [Mapview hg19]  
OMIM251270   610053   
Gene and transcription
Genbank (Entrez)AB051456 AF272887 AK000636 AK310419 AL137665
RefSeq transcript (Entrez)NM_001008658 NM_020461
Consensus coding sequences : CCDS (NCBI)TUBGCP6
Gene ExpressionTUBGCP6 [ NCBI-GEO ]   TUBGCP6 [ EBI - ARRAY_EXPRESS ]   TUBGCP6 [ SEEK ]   TUBGCP6 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBGCP6 [ Firebrowse - Broad ]
GenevisibleExpression of TUBGCP6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85378
GTEX Portal (Tissue expression)TUBGCP6
Human Protein AtlasENSG00000128159-TUBGCP6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RT7
PhosPhoSitePlusQ96RT7
Domains : Interpro (EBI)GCP    GCP_C    GCP_C_sf    GCP_N   
Domain families : Pfam (Sanger)GCP_C_terminal (PF04130)    GCP_N_terminal (PF17681)   
Domain families : Pfam (NCBI)pfam04130    pfam17681   
Conserved Domain (NCBI)TUBGCP6
PDB (RSDB)6V6C    6V6S    6X0U   
PDB Europe6V6C    6V6S    6X0U   
PDB (PDBSum)6V6C    6V6S    6X0U   
PDB (IMB)6V6C    6V6S    6X0U   
Structural Biology KnowledgeBase6V6C    6V6S    6X0U   
SCOP (Structural Classification of Proteins)6V6C    6V6S    6X0U   
CATH (Classification of proteins structures)6V6C    6V6S    6X0U   
SuperfamilyQ96RT7
AlphaFold pdb e-kbQ96RT7   
Human Protein Atlas [tissue]ENSG00000128159-TUBGCP6 [tissue]
HPRD15589
Protein Interaction databases
DIP (DOE-UCLA)Q96RT7
IntAct (EBI)Q96RT7
BioGRIDTUBGCP6
STRING (EMBL)TUBGCP6
ZODIACTUBGCP6
Ontologies - Pathways
QuickGOQ96RT7
Ontology : AmiGOmitotic cell cycle  spindle pole  equatorial microtubule organizing center  gamma-tubulin complex  gamma-tubulin large complex  gamma-tubulin large complex  centrosome  centrosome  cytosol  microtubule  microtubule nucleation  microtubule nucleation  microtubule binding  gamma-tubulin small complex  membrane  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  spindle assembly  meiotic cell cycle  
Ontology : EGO-EBImitotic cell cycle  spindle pole  equatorial microtubule organizing center  gamma-tubulin complex  gamma-tubulin large complex  gamma-tubulin large complex  centrosome  centrosome  cytosol  microtubule  microtubule nucleation  microtubule nucleation  microtubule binding  gamma-tubulin small complex  membrane  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  spindle assembly  meiotic cell cycle  
NDEx NetworkTUBGCP6
Atlas of Cancer Signalling NetworkTUBGCP6
Wikipedia pathwaysTUBGCP6
Orthology - Evolution
OrthoDB85378
GeneTree (enSembl)ENSG00000128159
Phylogenetic Trees/Animal Genes : TreeFamTUBGCP6
Homologs : HomoloGeneTUBGCP6
Homology/Alignments : Family Browser (UCSC)TUBGCP6
Gene fusions - Rearrangements
Fusion : QuiverTUBGCP6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBGCP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBGCP6
dbVarTUBGCP6
ClinVarTUBGCP6
MonarchTUBGCP6
1000_GenomesTUBGCP6 
Exome Variant ServerTUBGCP6
GNOMAD BrowserENSG00000128159
Varsome BrowserTUBGCP6
ACMGTUBGCP6 variants
VarityQ96RT7
Genomic Variants (DGV)TUBGCP6 [DGVbeta]
DECIPHERTUBGCP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBGCP6 
Mutations
ICGC Data PortalTUBGCP6 
TCGA Data PortalTUBGCP6 
Broad Tumor PortalTUBGCP6
OASIS PortalTUBGCP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBGCP6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTUBGCP6
Mutations and Diseases : HGMDTUBGCP6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTUBGCP6
DgiDB (Drug Gene Interaction Database)TUBGCP6
DoCM (Curated mutations)TUBGCP6
CIViC (Clinical Interpretations of Variants in Cancer)TUBGCP6
Cancer3DTUBGCP6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM251270    610053   
Orphanet2329   
DisGeNETTUBGCP6
MedgenTUBGCP6
Genetic Testing Registry TUBGCP6
NextProtQ96RT7 [Medical]
GENETestsTUBGCP6
Target ValidationTUBGCP6
Huge Navigator TUBGCP6 [HugePedia]
ClinGenTUBGCP6
Clinical trials, drugs, therapy
MyCancerGenomeTUBGCP6
Protein Interactions : CTDTUBGCP6
Pharm GKB GenePA38507
PharosQ96RT7
Clinical trialTUBGCP6
Miscellaneous
canSAR (ICR)TUBGCP6
HarmonizomeTUBGCP6
DataMed IndexTUBGCP6
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTUBGCP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:35 CEST 2021

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