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TUBGCP6 (tubulin gamma complex associated protein 6)

Identity

Alias_namestubulin, gamma complex associated protein 6
Alias_symbol (synonym)GCP6
KIAA1669
DJ402G11.6
Other aliasGCP-6
MCCRP
MCCRP1
MCPHCR
HGNC (Hugo) TUBGCP6
LocusID (NCBI) 85378
Atlas_Id 75375
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50217689 and ends at 50244971 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBGCP6   18127
Cards
Entrez_Gene (NCBI)TUBGCP6  85378  tubulin gamma complex associated protein 6
AliasesGCP-6; GCP6; MCCRP; MCCRP1; 
MCPHCR
GeneCards (Weizmann)TUBGCP6
Ensembl hg19 (Hinxton)ENSG00000128159 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128159 [Gene_View]  chr22:50217689-50244971 [Contig_View]  TUBGCP6 [Vega]
ICGC DataPortalENSG00000128159
TCGA cBioPortalTUBGCP6
AceView (NCBI)TUBGCP6
Genatlas (Paris)TUBGCP6
WikiGenes85378
SOURCE (Princeton)TUBGCP6
Genetics Home Reference (NIH)TUBGCP6
Genomic and cartography
GoldenPath hg38 (UCSC)TUBGCP6  -     chr22:50217689-50244971 -  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBGCP6  -     22q13.33   [Description]    (hg19-Feb_2009)
EnsemblTUBGCP6 - 22q13.33 [CytoView hg19]  TUBGCP6 - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBITUBGCP6 [Mapview hg19]  TUBGCP6 [Mapview hg38]
OMIM251270   610053   
Gene and transcription
Genbank (Entrez)AB051456 AF272887 AK000636 AK310419 AL137665
RefSeq transcript (Entrez)NM_001008658 NM_020461
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBGCP6
Cluster EST : UnigeneHs.336431 [ NCBI ]
CGAP (NCI)Hs.336431
Alternative Splicing GalleryENSG00000128159
Gene ExpressionTUBGCP6 [ NCBI-GEO ]   TUBGCP6 [ EBI - ARRAY_EXPRESS ]   TUBGCP6 [ SEEK ]   TUBGCP6 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBGCP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85378
GTEX Portal (Tissue expression)TUBGCP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RT7
Splice isoforms : SwissVarQ96RT7
PhosPhoSitePlusQ96RT7
Domains : Interpro (EBI)GCP   
Domain families : Pfam (Sanger)Spc97_Spc98 (PF04130)   
Domain families : Pfam (NCBI)pfam04130   
Conserved Domain (NCBI)TUBGCP6
DMDM Disease mutations85378
Blocks (Seattle)TUBGCP6
SuperfamilyQ96RT7
Human Protein AtlasENSG00000128159
Peptide AtlasQ96RT7
HPRD15589
IPIIPI00045491   IPI00552537   IPI00384691   IPI00855809   IPI00853377   
Protein Interaction databases
DIP (DOE-UCLA)Q96RT7
IntAct (EBI)Q96RT7
FunCoupENSG00000128159
BioGRIDTUBGCP6
STRING (EMBL)TUBGCP6
ZODIACTUBGCP6
Ontologies - Pathways
QuickGOQ96RT7
Ontology : AmiGOspindle pole  equatorial microtubule organizing center  structural constituent of cytoskeleton  centrosome  spindle pole body  cytosol  microtubule  microtubule nucleation  microtubule binding  gamma-tubulin ring complex  membrane  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  centrosome duplication  interphase microtubule nucleation by interphase microtubule organizing center  extracellular exosome  mitotic spindle assembly  
Ontology : EGO-EBIspindle pole  equatorial microtubule organizing center  structural constituent of cytoskeleton  centrosome  spindle pole body  cytosol  microtubule  microtubule nucleation  microtubule binding  gamma-tubulin ring complex  membrane  cytoplasmic microtubule organization  gamma-tubulin binding  microtubule minus-end binding  centrosome duplication  interphase microtubule nucleation by interphase microtubule organizing center  extracellular exosome  mitotic spindle assembly  
NDEx NetworkTUBGCP6
Atlas of Cancer Signalling NetworkTUBGCP6
Wikipedia pathwaysTUBGCP6
Orthology - Evolution
OrthoDB85378
GeneTree (enSembl)ENSG00000128159
Phylogenetic Trees/Animal Genes : TreeFamTUBGCP6
HOVERGENQ96RT7
HOGENOMQ96RT7
Homologs : HomoloGeneTUBGCP6
Homology/Alignments : Family Browser (UCSC)TUBGCP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBGCP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBGCP6
dbVarTUBGCP6
ClinVarTUBGCP6
1000_GenomesTUBGCP6 
Exome Variant ServerTUBGCP6
ExAC (Exome Aggregation Consortium)TUBGCP6 (select the gene name)
Genetic variants : HAPMAP85378
Genomic Variants (DGV)TUBGCP6 [DGVbeta]
DECIPHERTUBGCP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBGCP6 
Mutations
ICGC Data PortalTUBGCP6 
TCGA Data PortalTUBGCP6 
Broad Tumor PortalTUBGCP6
OASIS PortalTUBGCP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBGCP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBGCP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBGCP6
DgiDB (Drug Gene Interaction Database)TUBGCP6
DoCM (Curated mutations)TUBGCP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBGCP6 (select a term)
intoGenTUBGCP6
Cancer3DTUBGCP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM251270    610053   
Orphanet2329   
MedgenTUBGCP6
Genetic Testing Registry TUBGCP6
NextProtQ96RT7 [Medical]
TSGene85378
GENETestsTUBGCP6
Target ValidationTUBGCP6
Huge Navigator TUBGCP6 [HugePedia]
snp3D : Map Gene to Disease85378
BioCentury BCIQTUBGCP6
ClinGenTUBGCP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85378
Chemical/Pharm GKB GenePA38507
Clinical trialTUBGCP6
Miscellaneous
canSAR (ICR)TUBGCP6 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBGCP6
EVEXTUBGCP6
GoPubMedTUBGCP6
iHOPTUBGCP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:02 CEST 2017

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