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TUFT1 (tuftelin 1)

Identity

Other alias-
HGNC (Hugo) TUFT1
LocusID (NCBI) 7286
Atlas_Id 75376
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151512781 and ends at 151556059 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KRT6A (12q13.13) / TUFT1 (1q21.3)TUFT1 (1q21.3) / ACBD6 (1q25.2)TUFT1 (1q21.3) / CGN (1q21.3)
TUFT1 (1q21.3) / RNF115 (1q21.1)TUFT1 (1q21.3) / TUFT1 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUFT1   12422
Cards
Entrez_Gene (NCBI)TUFT1  7286  tuftelin 1
Aliases
GeneCards (Weizmann)TUFT1
Ensembl hg19 (Hinxton)ENSG00000143367 [Gene_View]  chr1:151512781-151556059 [Contig_View]  TUFT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143367 [Gene_View]  chr1:151512781-151556059 [Contig_View]  TUFT1 [Vega]
ICGC DataPortalENSG00000143367
TCGA cBioPortalTUFT1
AceView (NCBI)TUFT1
Genatlas (Paris)TUFT1
WikiGenes7286
SOURCE (Princeton)TUFT1
Genetics Home Reference (NIH)TUFT1
Genomic and cartography
GoldenPath hg19 (UCSC)TUFT1  -     chr1:151512781-151556059 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TUFT1  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblTUFT1 - 1q21.3 [CytoView hg19]  TUFT1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBITUFT1 [Mapview hg19]  TUFT1 [Mapview hg38]
OMIM600087   
Gene and transcription
Genbank (Entrez)AF254260 AK026989 AK075001 AK223161 AK298066
RefSeq transcript (Entrez)NM_001126337 NM_001301317 NM_020127
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)TUFT1
Cluster EST : UnigeneHs.489922 [ NCBI ]
CGAP (NCI)Hs.489922
Alternative Splicing GalleryENSG00000143367
Gene ExpressionTUFT1 [ NCBI-GEO ]   TUFT1 [ EBI - ARRAY_EXPRESS ]   TUFT1 [ SEEK ]   TUFT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUFT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7286
GTEX Portal (Tissue expression)TUFT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NNX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NNX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NNX1
Splice isoforms : SwissVarQ9NNX1
PhosPhoSitePlusQ9NNX1
Domains : Interpro (EBI)Tuftelin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TUFT1
DMDM Disease mutations7286
Blocks (Seattle)TUFT1
SuperfamilyQ9NNX1
Human Protein AtlasENSG00000143367
Peptide AtlasQ9NNX1
HPRD02516
IPIIPI00024497   IPI00218511   IPI00218512   IPI00922773   IPI00922110   IPI01011236   IPI00852920   
Protein Interaction databases
DIP (DOE-UCLA)Q9NNX1
IntAct (EBI)Q9NNX1
FunCoupENSG00000143367
BioGRIDTUFT1
STRING (EMBL)TUFT1
ZODIACTUFT1
Ontologies - Pathways
QuickGOQ9NNX1
Ontology : AmiGOprotein binding  extracellular region  cytoplasm  bone mineralization  structural constituent of tooth enamel  odontogenesis  
Ontology : EGO-EBIprotein binding  extracellular region  cytoplasm  bone mineralization  structural constituent of tooth enamel  odontogenesis  
NDEx NetworkTUFT1
Atlas of Cancer Signalling NetworkTUFT1
Wikipedia pathwaysTUFT1
Orthology - Evolution
OrthoDB7286
GeneTree (enSembl)ENSG00000143367
Phylogenetic Trees/Animal Genes : TreeFamTUFT1
HOVERGENQ9NNX1
HOGENOMQ9NNX1
Homologs : HomoloGeneTUFT1
Homology/Alignments : Family Browser (UCSC)TUFT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUFT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUFT1
dbVarTUFT1
ClinVarTUFT1
1000_GenomesTUFT1 
Exome Variant ServerTUFT1
ExAC (Exome Aggregation Consortium)TUFT1 (select the gene name)
Genetic variants : HAPMAP7286
Genomic Variants (DGV)TUFT1 [DGVbeta]
DECIPHER (Syndromes)1:151512781-151556059  ENSG00000143367
CONAN: Copy Number AnalysisTUFT1 
Mutations
ICGC Data PortalTUFT1 
TCGA Data PortalTUFT1 
Broad Tumor PortalTUFT1
OASIS PortalTUFT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUFT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUFT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUFT1
DgiDB (Drug Gene Interaction Database)TUFT1
DoCM (Curated mutations)TUFT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUFT1 (select a term)
intoGenTUFT1
Cancer3DTUFT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600087   
Orphanet
MedgenTUFT1
Genetic Testing Registry TUFT1
NextProtQ9NNX1 [Medical]
TSGene7286
GENETestsTUFT1
Huge Navigator TUFT1 [HugePedia]
snp3D : Map Gene to Disease7286
BioCentury BCIQTUFT1
ClinGenTUFT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7286
Chemical/Pharm GKB GenePA37084
Clinical trialTUFT1
Miscellaneous
canSAR (ICR)TUFT1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUFT1
EVEXTUFT1
GoPubMedTUFT1
iHOPTUFT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:28 CET 2017

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