Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TUG1 (taurine up-regulated 1)

Identity

Alias (NCBI)LINC00080
NCRNA00080
TI-227H
HGNC (Hugo) TUG1
HGNC Alias symbFLJ20618
NCRNA00080
LINC00080
HGNC Alias namenon-protein coding RNA 80
 long intergenic non-protein coding RNA 80
HGNC Previous nametaurine upregulated 1 (non-protein coding)
 taurine up-regulated 1 (non-protein coding)
LocusID (NCBI) 55000
Atlas_Id 53567
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30969211 and ends at 30979394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TUG1 (22q12.2) / ACOX1 (17q25.1)TUG1 (22q12.2) / MGAT5 (2q21.2)TUG1 (22q12.2) / SNX22 (15q22.31)
TUG1 (22q12.2) / TUG1 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TUG1   26066
Cards
Entrez_Gene (NCBI)TUG1    taurine up-regulated 1
AliasesLINC00080; NCRNA00080; TI-227H
GeneCards (Weizmann)TUG1
Ensembl hg19 (Hinxton)ENSG00000253352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253352 [Gene_View]  ENSG00000253352 [Sequence]  chr22:30969211-30979394 [Contig_View]  TUG1 [Vega]
ICGC DataPortalENSG00000253352
TCGA cBioPortalTUG1
AceView (NCBI)TUG1
Genatlas (Paris)TUG1
SOURCE (Princeton)TUG1
Genetics Home Reference (NIH)TUG1
Genomic and cartography
GoldenPath hg38 (UCSC)TUG1  -     chr22:30969211-30979394 +  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUG1  -     22q12.2   [Description]    (hg19-Feb_2009)
GoldenPathTUG1 - 22q12.2 [CytoView hg19]  TUG1 - 22q12.2 [CytoView hg38]
ImmunoBaseENSG00000253352
Genome Data Viewer NCBITUG1 [Mapview hg19]  
OMIM614971   
Gene and transcription
Genbank (Entrez)AB073661 AI186830 AK000625 AK000749 AK056480
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TUG1
Gene ExpressionTUG1 [ NCBI-GEO ]   TUG1 [ EBI - ARRAY_EXPRESS ]   TUG1 [ SEEK ]   TUG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUG1 [ Firebrowse - Broad ]
GenevisibleExpression of TUG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55000
GTEX Portal (Tissue expression)TUG1
Human Protein AtlasENSG00000253352-TUG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TUG1
Human Protein Atlas [tissue]ENSG00000253352-TUG1 [tissue]
HPRD08629
Protein Interaction databases
BioGRIDTUG1
STRING (EMBL)TUG1
ZODIACTUG1
Ontologies - Pathways
Litterature
PubMed168 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTUG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:52 CEST 2021

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