Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TUG1 (taurine up-regulated 1 (non-protein coding))

Identity

Alias_namestaurine upregulated 1 (non-protein coding)
Alias_symbol (synonym)FLJ20618
NCRNA00080
LINC00080
Other aliasTI-227H
HGNC (Hugo) TUG1
LocusID (NCBI) 55000
Atlas_Id 53567
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30969211 and ends at 30979394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TUG1 (22q12.2) / ACOX1 (17q25.1)TUG1 (22q12.2) / MGAT5 (2q21.2)TUG1 (22q12.2) / SNX22 (15q22.31)
TUG1 (22q12.2) / TUG1 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUG1   26066
Cards
Entrez_Gene (NCBI)TUG1  55000  taurine up-regulated 1 (non-protein coding)
AliasesLINC00080; NCRNA00080; TI-227H
GeneCards (Weizmann)TUG1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:30969211-30979394 [Contig_View]  TUG1 [Vega]
TCGA cBioPortalTUG1
AceView (NCBI)TUG1
Genatlas (Paris)TUG1
WikiGenes55000
SOURCE (Princeton)TUG1
Genetics Home Reference (NIH)TUG1
Genomic and cartography
GoldenPath hg38 (UCSC)TUG1  -     chr22:30969211-30979394 +  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUG1  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblTUG1 - 22q12.2 [CytoView hg19]  TUG1 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBITUG1 [Mapview hg19]  TUG1 [Mapview hg38]
OMIM614971   
Gene and transcription
Genbank (Entrez)AB073661 AI186830 AK000625 AK000749 AK056480
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUG1
Cluster EST : UnigeneHs.554829 [ NCBI ]
CGAP (NCI)Hs.554829
Gene ExpressionTUG1 [ NCBI-GEO ]   TUG1 [ EBI - ARRAY_EXPRESS ]   TUG1 [ SEEK ]   TUG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)55000
GTEX Portal (Tissue expression)TUG1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TUG1
DMDM Disease mutations55000
Blocks (Seattle)TUG1
HPRD08629
Protein Interaction databases
BioGRIDTUG1
STRING (EMBL)TUG1
ZODIACTUG1
Ontologies - Pathways
Huge Navigator TUG1 [HugePedia]
snp3D : Map Gene to Disease55000
BioCentury BCIQTUG1
ClinGenTUG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55000
Chemical/Pharm GKB GenePA164727367
Clinical trialTUG1
Miscellaneous
canSAR (ICR)TUG1 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUG1
EVEXTUG1
GoPubMedTUG1
iHOPTUG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:40:14 CET 2017

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