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TULP2 (tubby like protein 2)

Identity

Alias_symbol (synonym)TUBL2
CT65
Other alias
HGNC (Hugo) TULP2
LocusID (NCBI) 7288
Atlas_Id 75378
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49384222 and ends at 49401996 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TULP2   12424
Cards
Entrez_Gene (NCBI)TULP2  7288  tubby like protein 2
AliasesCT65; TUBL2
GeneCards (Weizmann)TULP2
Ensembl hg19 (Hinxton)ENSG00000104804 [Gene_View]  chr19:49384222-49401996 [Contig_View]  TULP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104804 [Gene_View]  chr19:49384222-49401996 [Contig_View]  TULP2 [Vega]
ICGC DataPortalENSG00000104804
TCGA cBioPortalTULP2
AceView (NCBI)TULP2
Genatlas (Paris)TULP2
WikiGenes7288
SOURCE (Princeton)TULP2
Genetics Home Reference (NIH)TULP2
Genomic and cartography
GoldenPath hg19 (UCSC)TULP2  -     chr19:49384222-49401996 -  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TULP2  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblTULP2 - 19q13.33 [CytoView hg19]  TULP2 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBITULP2 [Mapview hg19]  TULP2 [Mapview hg38]
OMIM602309   
Gene and transcription
Genbank (Entrez)BC026070 DB442827 DQ890936 U82469
RefSeq transcript (Entrez)NM_003323
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)TULP2
Cluster EST : UnigeneHs.104636 [ NCBI ]
CGAP (NCI)Hs.104636
Alternative Splicing GalleryENSG00000104804
Gene ExpressionTULP2 [ NCBI-GEO ]   TULP2 [ EBI - ARRAY_EXPRESS ]   TULP2 [ SEEK ]   TULP2 [ MEM ]
Gene Expression Viewer (FireBrowse)TULP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7288
GTEX Portal (Tissue expression)TULP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00295   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00295  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00295
Splice isoforms : SwissVarO00295
PhosPhoSitePlusO00295
Domaine pattern : Prosite (Expaxy)TUB_1 (PS01200)   
Domains : Interpro (EBI)Tubby_C    Tubby_C-like    Tubby_C_CS    Tubby_N   
Domain families : Pfam (Sanger)Tub (PF01167)   
Domain families : Pfam (NCBI)pfam01167   
Conserved Domain (NCBI)TULP2
DMDM Disease mutations7288
Blocks (Seattle)TULP2
SuperfamilyO00295
Human Protein AtlasENSG00000104804
Peptide AtlasO00295
HPRD03813
IPIIPI00010895   IPI00985343   IPI00974495   IPI00977514   IPI00976741   IPI00976036   
Protein Interaction databases
DIP (DOE-UCLA)O00295
IntAct (EBI)O00295
FunCoupENSG00000104804
BioGRIDTULP2
STRING (EMBL)TULP2
ZODIACTULP2
Ontologies - Pathways
QuickGOO00295
Ontology : AmiGOextracellular region  cytoplasm  cilium  visual perception  protein complex binding  phosphatidylinositol binding  receptor localization to nonmotile primary cilium  protein localization to photoreceptor outer segment  
Ontology : EGO-EBIextracellular region  cytoplasm  cilium  visual perception  protein complex binding  phosphatidylinositol binding  receptor localization to nonmotile primary cilium  protein localization to photoreceptor outer segment  
NDEx NetworkTULP2
Atlas of Cancer Signalling NetworkTULP2
Wikipedia pathwaysTULP2
Orthology - Evolution
OrthoDB7288
GeneTree (enSembl)ENSG00000104804
Phylogenetic Trees/Animal Genes : TreeFamTULP2
HOVERGENO00295
HOGENOMO00295
Homologs : HomoloGeneTULP2
Homology/Alignments : Family Browser (UCSC)TULP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTULP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TULP2
dbVarTULP2
ClinVarTULP2
1000_GenomesTULP2 
Exome Variant ServerTULP2
ExAC (Exome Aggregation Consortium)TULP2 (select the gene name)
Genetic variants : HAPMAP7288
Genomic Variants (DGV)TULP2 [DGVbeta]
DECIPHER (Syndromes)19:49384222-49401996  ENSG00000104804
CONAN: Copy Number AnalysisTULP2 
Mutations
ICGC Data PortalTULP2 
TCGA Data PortalTULP2 
Broad Tumor PortalTULP2
OASIS PortalTULP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTULP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTULP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TULP2
DgiDB (Drug Gene Interaction Database)TULP2
DoCM (Curated mutations)TULP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TULP2 (select a term)
intoGenTULP2
Cancer3DTULP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602309   
Orphanet
MedgenTULP2
Genetic Testing Registry TULP2
NextProtO00295 [Medical]
TSGene7288
GENETestsTULP2
Huge Navigator TULP2 [HugePedia]
snp3D : Map Gene to Disease7288
BioCentury BCIQTULP2
ClinGenTULP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7288
Chemical/Pharm GKB GenePA37086
Clinical trialTULP2
Miscellaneous
canSAR (ICR)TULP2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTULP2
EVEXTULP2
GoPubMedTULP2
iHOPTULP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:50:28 CET 2017

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