Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TULP3 (tubby like protein 3)

Identity

Alias_symbol (synonym)TUBL3
Other alias
HGNC (Hugo) TULP3
LocusID (NCBI) 7289
Atlas_Id 46764
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 2890867 and ends at 2941140 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GREB1L (18q11.1) / TULP3 (12p13.33)TULP3 (12p13.33) / LRBA (4q31.3)TULP3 (12p13.33) / TULP3 (12p13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TULP3   12425
Cards
Entrez_Gene (NCBI)TULP3  7289  tubby like protein 3
AliasesTUBL3
GeneCards (Weizmann)TULP3
Ensembl hg19 (Hinxton)ENSG00000078246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000078246 [Gene_View]  chr12:2890867-2941140 [Contig_View]  TULP3 [Vega]
ICGC DataPortalENSG00000078246
TCGA cBioPortalTULP3
AceView (NCBI)TULP3
Genatlas (Paris)TULP3
WikiGenes7289
SOURCE (Princeton)TULP3
Genetics Home Reference (NIH)TULP3
Genomic and cartography
GoldenPath hg38 (UCSC)TULP3  -     chr12:2890867-2941140 +  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TULP3  -     12p13.33   [Description]    (hg19-Feb_2009)
EnsemblTULP3 - 12p13.33 [CytoView hg19]  TULP3 - 12p13.33 [CytoView hg38]
Mapping of homologs : NCBITULP3 [Mapview hg19]  TULP3 [Mapview hg38]
OMIM604730   
Gene and transcription
Genbank (Entrez)AF045583 AK024246 AK293285 AK307434 BC019618
RefSeq transcript (Entrez)NM_001160408 NM_003324
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TULP3
Cluster EST : UnigeneHs.655333 [ NCBI ]
CGAP (NCI)Hs.655333
Alternative Splicing GalleryENSG00000078246
Gene ExpressionTULP3 [ NCBI-GEO ]   TULP3 [ EBI - ARRAY_EXPRESS ]   TULP3 [ SEEK ]   TULP3 [ MEM ]
Gene Expression Viewer (FireBrowse)TULP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7289
GTEX Portal (Tissue expression)TULP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75386   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75386  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75386
Splice isoforms : SwissVarO75386
PhosPhoSitePlusO75386
Domaine pattern : Prosite (Expaxy)TUB_1 (PS01200)    TUB_2 (PS01201)   
Domains : Interpro (EBI)Tubby_C    Tubby_C-like    Tubby_C_CS    Tubby_N   
Domain families : Pfam (Sanger)Tub (PF01167)    Tub_N (PF16322)   
Domain families : Pfam (NCBI)pfam01167    pfam16322   
Conserved Domain (NCBI)TULP3
DMDM Disease mutations7289
Blocks (Seattle)TULP3
SuperfamilyO75386
Human Protein AtlasENSG00000078246
Peptide AtlasO75386
HPRD05292
IPIIPI00025353   IPI00791436   IPI00982517   IPI01014197   IPI01011740   IPI00472322   IPI01011265   IPI01011810   
Protein Interaction databases
DIP (DOE-UCLA)O75386
IntAct (EBI)O75386
FunCoupENSG00000078246
BioGRIDTULP3
STRING (EMBL)TULP3
ZODIACTULP3
Ontologies - Pathways
QuickGOO75386
Ontology : AmiGOneural tube closure  protein binding  phosphatidylinositol-4,5-bisphosphate binding  extracellular region  nucleus  nucleus  nucleolus  cytoplasm  plasma membrane  plasma membrane  cilium  cilium  axoneme  regulation of transcription, DNA-templated  G-protein coupled receptor signaling pathway  brain development  regulation of G-protein coupled receptor protein signaling pathway  anterior/posterior pattern specification  enzyme binding  negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning  central nervous system neuron differentiation  intraciliary transport particle A  embryonic camera-type eye development  protein complex binding  phosphatidylinositol binding  embryonic digit morphogenesis  negative regulation of smoothened signaling pathway  embryonic neurocranium morphogenesis  bone development  bronchus morphogenesis  smoothened signaling pathway involved in dorsal/ventral neural tube patterning  ganglion development  receptor localization to non-motile cilium  ciliary base  negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning  protein localization to photoreceptor outer segment  
Ontology : EGO-EBIneural tube closure  protein binding  phosphatidylinositol-4,5-bisphosphate binding  extracellular region  nucleus  nucleus  nucleolus  cytoplasm  plasma membrane  plasma membrane  cilium  cilium  axoneme  regulation of transcription, DNA-templated  G-protein coupled receptor signaling pathway  brain development  regulation of G-protein coupled receptor protein signaling pathway  anterior/posterior pattern specification  enzyme binding  negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning  central nervous system neuron differentiation  intraciliary transport particle A  embryonic camera-type eye development  protein complex binding  phosphatidylinositol binding  embryonic digit morphogenesis  negative regulation of smoothened signaling pathway  embryonic neurocranium morphogenesis  bone development  bronchus morphogenesis  smoothened signaling pathway involved in dorsal/ventral neural tube patterning  ganglion development  receptor localization to non-motile cilium  ciliary base  negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning  protein localization to photoreceptor outer segment  
NDEx NetworkTULP3
Atlas of Cancer Signalling NetworkTULP3
Wikipedia pathwaysTULP3
Orthology - Evolution
OrthoDB7289
GeneTree (enSembl)ENSG00000078246
Phylogenetic Trees/Animal Genes : TreeFamTULP3
HOVERGENO75386
HOGENOMO75386
Homologs : HomoloGeneTULP3
Homology/Alignments : Family Browser (UCSC)TULP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTULP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TULP3
dbVarTULP3
ClinVarTULP3
1000_GenomesTULP3 
Exome Variant ServerTULP3
ExAC (Exome Aggregation Consortium)TULP3 (select the gene name)
Genetic variants : HAPMAP7289
Genomic Variants (DGV)TULP3 [DGVbeta]
DECIPHERTULP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTULP3 
Mutations
ICGC Data PortalTULP3 
TCGA Data PortalTULP3 
Broad Tumor PortalTULP3
OASIS PortalTULP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTULP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTULP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TULP3
DgiDB (Drug Gene Interaction Database)TULP3
DoCM (Curated mutations)TULP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TULP3 (select a term)
intoGenTULP3
Cancer3DTULP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604730   
Orphanet
MedgenTULP3
Genetic Testing Registry TULP3
NextProtO75386 [Medical]
TSGene7289
GENETestsTULP3
Huge Navigator TULP3 [HugePedia]
snp3D : Map Gene to Disease7289
BioCentury BCIQTULP3
ClinGenTULP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7289
Chemical/Pharm GKB GenePA37087
Clinical trialTULP3
Miscellaneous
canSAR (ICR)TULP3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTULP3
EVEXTULP3
GoPubMedTULP3
iHOPTULP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:42:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.