Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TULP4 (tubby like protein 4)

Identity

Alias_symbol (synonym)TUSP
KIAA1397
Other alias
HGNC (Hugo) TULP4
LocusID (NCBI) 56995
Atlas_Id 75379
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 158312660 and ends at 158511824 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RHCG (15q26.1) / TULP4 (6q25.3)TULP4 (6q25.3) / ESR1 (6q25.1)TULP4 (6q25.3) / RACK1 (5q35.3)
TULP4 (6q25.3) / SYNJ2 (6q25.3)TULP4 (6q25.3) / ZDHHC14 (6q25.3)TULP4 ZDHHC14
TULP4 SYNJ2TULP4 ESR1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(6;6)(q25;q25) TULP4/ZDHHC14
t(6;6)(q25;q25) TULP4/SYNJ2
t(6;6)(q25;q25) TULP4/ESR1


External links

Nomenclature
HGNC (Hugo)TULP4   15530
Cards
Entrez_Gene (NCBI)TULP4  56995  tubby like protein 4
AliasesTUSP
GeneCards (Weizmann)TULP4
Ensembl hg19 (Hinxton)ENSG00000130338 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130338 [Gene_View]  ENSG00000130338 [Sequence]  chr6:158312660-158511824 [Contig_View]  TULP4 [Vega]
ICGC DataPortalENSG00000130338
TCGA cBioPortalTULP4
AceView (NCBI)TULP4
Genatlas (Paris)TULP4
WikiGenes56995
SOURCE (Princeton)TULP4
Genetics Home Reference (NIH)TULP4
Genomic and cartography
GoldenPath hg38 (UCSC)TULP4  -     chr6:158312660-158511824 +  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TULP4  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblTULP4 - 6q25.3 [CytoView hg19]  TULP4 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBITULP4 [Mapview hg19]  TULP4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037818 AF087973 AF219946 AF288480 AK092091
RefSeq transcript (Entrez)NM_001007466 NM_020245
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TULP4
Cluster EST : UnigeneHs.486993 [ NCBI ]
CGAP (NCI)Hs.486993
Alternative Splicing GalleryENSG00000130338
Gene ExpressionTULP4 [ NCBI-GEO ]   TULP4 [ EBI - ARRAY_EXPRESS ]   TULP4 [ SEEK ]   TULP4 [ MEM ]
Gene Expression Viewer (FireBrowse)TULP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56995
GTEX Portal (Tissue expression)TULP4
Human Protein AtlasENSG00000130338-TULP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRJ4
Splice isoforms : SwissVarQ9NRJ4
PhosPhoSitePlusQ9NRJ4
Domaine pattern : Prosite (Expaxy)SOCS (PS50225)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)SOCS_box    Tubby_C    Tubby_C-like    Tumour_necrosis_fac-like_dom    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)Tub (PF01167)   
Domain families : Pfam (NCBI)pfam01167   
Domain families : Smart (EMBL)SOCS_box (SM00969)  WD40 (SM00320)  
Conserved Domain (NCBI)TULP4
DMDM Disease mutations56995
Blocks (Seattle)TULP4
SuperfamilyQ9NRJ4
Human Protein Atlas [tissue]ENSG00000130338-TULP4 [tissue]
Peptide AtlasQ9NRJ4
HPRD18246
IPIIPI00216584   IPI00908555   IPI00024994   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRJ4
IntAct (EBI)Q9NRJ4
FunCoupENSG00000130338
BioGRIDTULP4
STRING (EMBL)TULP4
ZODIACTULP4
Ontologies - Pathways
QuickGOQ9NRJ4
Ontology : AmiGOcytoplasm  cilium  protein ubiquitination  phosphatidylinositol binding  intracellular signal transduction  protein localization to cilium  
Ontology : EGO-EBIcytoplasm  cilium  protein ubiquitination  phosphatidylinositol binding  intracellular signal transduction  protein localization to cilium  
NDEx NetworkTULP4
Atlas of Cancer Signalling NetworkTULP4
Wikipedia pathwaysTULP4
Orthology - Evolution
OrthoDB56995
GeneTree (enSembl)ENSG00000130338
Phylogenetic Trees/Animal Genes : TreeFamTULP4
HOVERGENQ9NRJ4
HOGENOMQ9NRJ4
Homologs : HomoloGeneTULP4
Homology/Alignments : Family Browser (UCSC)TULP4
Gene fusions - Rearrangements
Fusion PortalTULP4 ZDHHC14
Fusion PortalTULP4 SYNJ2
Fusion PortalTULP4 ESR1
Fusion : QuiverTULP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTULP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TULP4
dbVarTULP4
ClinVarTULP4
1000_GenomesTULP4 
Exome Variant ServerTULP4
ExAC (Exome Aggregation Consortium)ENSG00000130338
GNOMAD BrowserENSG00000130338
Varsome BrowserTULP4
Genetic variants : HAPMAP56995
Genomic Variants (DGV)TULP4 [DGVbeta]
DECIPHERTULP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTULP4 
Mutations
ICGC Data PortalTULP4 
TCGA Data PortalTULP4 
Broad Tumor PortalTULP4
OASIS PortalTULP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTULP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTULP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TULP4
DgiDB (Drug Gene Interaction Database)TULP4
DoCM (Curated mutations)TULP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TULP4 (select a term)
intoGenTULP4
Cancer3DTULP4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTULP4
MedgenTULP4
Genetic Testing Registry TULP4
NextProtQ9NRJ4 [Medical]
TSGene56995
GENETestsTULP4
Target ValidationTULP4
Huge Navigator TULP4 [HugePedia]
snp3D : Map Gene to Disease56995
BioCentury BCIQTULP4
ClinGenTULP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56995
Chemical/Pharm GKB GenePA134880863
Clinical trialTULP4
Miscellaneous
canSAR (ICR)TULP4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTULP4
EVEXTULP4
GoPubMedTULP4
iHOPTULP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:37:23 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.