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TULP4 (TUB like protein 4)

Identity

Alias (NCBI)TUSP
HGNC (Hugo) TULP4
HGNC Alias symbTUSP
KIAA1397
LocusID (NCBI) 56995
Atlas_Id 75379
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 158312465 and ends at 158511824 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RHCG (15q26.1) / TULP4 (6q25.3)TULP4 (6q25.3) / ESR1 (6q25.1)TULP4 (6q25.3) / RACK1 (5q35.3)
TULP4 (6q25.3) / SYNJ2 (6q25.3)TULP4 (6q25.3) / ZDHHC14 (6q25.3)TULP4 ZDHHC14
TULP4 SYNJ2TULP4 ESR1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TULP4   15530
Cards
Entrez_Gene (NCBI)TULP4    TUB like protein 4
AliasesTUSP
GeneCards (Weizmann)TULP4
Ensembl hg19 (Hinxton)ENSG00000130338 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130338 [Gene_View]  ENSG00000130338 [Sequence]  chr6:158312465-158511824 [Contig_View]  TULP4 [Vega]
ICGC DataPortalENSG00000130338
TCGA cBioPortalTULP4
AceView (NCBI)TULP4
Genatlas (Paris)TULP4
SOURCE (Princeton)TULP4
Genetics Home Reference (NIH)TULP4
Genomic and cartography
GoldenPath hg38 (UCSC)TULP4  -     chr6:158312465-158511824 +  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TULP4  -     6q25.3   [Description]    (hg19-Feb_2009)
GoldenPathTULP4 - 6q25.3 [CytoView hg19]  TULP4 - 6q25.3 [CytoView hg38]
ImmunoBaseENSG00000130338
Genome Data Viewer NCBITULP4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB037818 AF087973 AF219946 AF288480 AK092091
RefSeq transcript (Entrez)NM_001007466 NM_020245
Consensus coding sequences : CCDS (NCBI)TULP4
Gene ExpressionTULP4 [ NCBI-GEO ]   TULP4 [ EBI - ARRAY_EXPRESS ]   TULP4 [ SEEK ]   TULP4 [ MEM ]
Gene Expression Viewer (FireBrowse)TULP4 [ Firebrowse - Broad ]
GenevisibleExpression of TULP4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56995
GTEX Portal (Tissue expression)TULP4
Human Protein AtlasENSG00000130338-TULP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRJ4
PhosPhoSitePlusQ9NRJ4
Domaine pattern : Prosite (Expaxy)SOCS (PS50225)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)SOCS_box    Tubby-like_C    Tubby_C    Tumour_necrosis_fac-like_dom    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)Tub (PF01167)   
Domain families : Pfam (NCBI)pfam01167   
Domain families : Smart (EMBL)SOCS_box (SM00969)  WD40 (SM00320)  
Conserved Domain (NCBI)TULP4
SuperfamilyQ9NRJ4
AlphaFold pdb e-kbQ9NRJ4   
Human Protein Atlas [tissue]ENSG00000130338-TULP4 [tissue]
HPRD18246
Protein Interaction databases
DIP (DOE-UCLA)Q9NRJ4
IntAct (EBI)Q9NRJ4
BioGRIDTULP4
STRING (EMBL)TULP4
ZODIACTULP4
Ontologies - Pathways
QuickGOQ9NRJ4
Ontology : AmiGOcytoplasm  cytosol  protein ubiquitination  post-translational protein modification  
Ontology : EGO-EBIcytoplasm  cytosol  protein ubiquitination  post-translational protein modification  
NDEx NetworkTULP4
Atlas of Cancer Signalling NetworkTULP4
Wikipedia pathwaysTULP4
Orthology - Evolution
OrthoDB56995
GeneTree (enSembl)ENSG00000130338
Phylogenetic Trees/Animal Genes : TreeFamTULP4
Homologs : HomoloGeneTULP4
Homology/Alignments : Family Browser (UCSC)TULP4
Gene fusions - Rearrangements
Fusion : QuiverTULP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTULP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TULP4
dbVarTULP4
ClinVarTULP4
MonarchTULP4
1000_GenomesTULP4 
Exome Variant ServerTULP4
GNOMAD BrowserENSG00000130338
Varsome BrowserTULP4
ACMGTULP4 variants
VarityQ9NRJ4
Genomic Variants (DGV)TULP4 [DGVbeta]
DECIPHERTULP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTULP4 
Mutations
ICGC Data PortalTULP4 
TCGA Data PortalTULP4 
Broad Tumor PortalTULP4
OASIS PortalTULP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTULP4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTULP4
Mutations and Diseases : HGMDTULP4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTULP4
DgiDB (Drug Gene Interaction Database)TULP4
DoCM (Curated mutations)TULP4
CIViC (Clinical Interpretations of Variants in Cancer)TULP4
Cancer3DTULP4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTULP4
MedgenTULP4
Genetic Testing Registry TULP4
NextProtQ9NRJ4 [Medical]
GENETestsTULP4
Target ValidationTULP4
Huge Navigator TULP4 [HugePedia]
ClinGenTULP4
Clinical trials, drugs, therapy
MyCancerGenomeTULP4
Protein Interactions : CTDTULP4
Pharm GKB GenePA134880863
PharosQ9NRJ4
Clinical trialTULP4
Miscellaneous
canSAR (ICR)TULP4
HarmonizomeTULP4
DataMed IndexTULP4
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTULP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:35 CEST 2021

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