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TUSC1 (tumor suppressor candidate 1)

Identity

Alias_symbol (synonym)TSG-9
Other aliasCCDC89B
TSG9
HGNC (Hugo) TUSC1
LocusID (NCBI) 286319
Atlas_Id 42955
Location 9p21.2  [Link to chromosome band 9p21]
Location_base_pair Starts at 25676389 and ends at 25678858 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUSC1   31010
Cards
Entrez_Gene (NCBI)TUSC1  286319  tumor suppressor candidate 1
AliasesCCDC89B; TSG-9; TSG9
GeneCards (Weizmann)TUSC1
Ensembl hg19 (Hinxton)ENSG00000198680 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198680 [Gene_View]  chr9:25676389-25678858 [Contig_View]  TUSC1 [Vega]
ICGC DataPortalENSG00000198680
TCGA cBioPortalTUSC1
AceView (NCBI)TUSC1
Genatlas (Paris)TUSC1
WikiGenes286319
SOURCE (Princeton)TUSC1
Genetics Home Reference (NIH)TUSC1
Genomic and cartography
GoldenPath hg38 (UCSC)TUSC1  -     chr9:25676389-25678858 -  9p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUSC1  -     9p21.2   [Description]    (hg19-Feb_2009)
EnsemblTUSC1 - 9p21.2 [CytoView hg19]  TUSC1 - 9p21.2 [CytoView hg38]
Mapping of homologs : NCBITUSC1 [Mapview hg19]  TUSC1 [Mapview hg38]
OMIM610529   
Gene and transcription
Genbank (Entrez)AY168647 BC017510 BC028316 BC036931 BC046919
RefSeq transcript (Entrez)NM_001004125
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUSC1
Cluster EST : UnigeneHs.606014 [ NCBI ]
CGAP (NCI)Hs.606014
Alternative Splicing GalleryENSG00000198680
Gene ExpressionTUSC1 [ NCBI-GEO ]   TUSC1 [ EBI - ARRAY_EXPRESS ]   TUSC1 [ SEEK ]   TUSC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUSC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286319
GTEX Portal (Tissue expression)TUSC1
Human Protein AtlasENSG00000198680-TUSC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TAM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TAM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TAM9
Splice isoforms : SwissVarQ2TAM9
PhosPhoSitePlusQ2TAM9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TUSC1
DMDM Disease mutations286319
Blocks (Seattle)TUSC1
SuperfamilyQ2TAM9
Human Protein Atlas [tissue]ENSG00000198680-TUSC1 [tissue]
Peptide AtlasQ2TAM9
HPRD18247
IPIIPI00465443   
Protein Interaction databases
DIP (DOE-UCLA)Q2TAM9
IntAct (EBI)Q2TAM9
FunCoupENSG00000198680
BioGRIDTUSC1
STRING (EMBL)TUSC1
ZODIACTUSC1
Ontologies - Pathways
QuickGOQ2TAM9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTUSC1
Atlas of Cancer Signalling NetworkTUSC1
Wikipedia pathwaysTUSC1
Orthology - Evolution
OrthoDB286319
GeneTree (enSembl)ENSG00000198680
Phylogenetic Trees/Animal Genes : TreeFamTUSC1
HOVERGENQ2TAM9
HOGENOMQ2TAM9
Homologs : HomoloGeneTUSC1
Homology/Alignments : Family Browser (UCSC)TUSC1
Gene fusions - Rearrangements
Tumor Fusion PortalTUSC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUSC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUSC1
dbVarTUSC1
ClinVarTUSC1
1000_GenomesTUSC1 
Exome Variant ServerTUSC1
ExAC (Exome Aggregation Consortium)ENSG00000198680
GNOMAD BrowserENSG00000198680
Genetic variants : HAPMAP286319
Genomic Variants (DGV)TUSC1 [DGVbeta]
DECIPHERTUSC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUSC1 
Mutations
ICGC Data PortalTUSC1 
TCGA Data PortalTUSC1 
Broad Tumor PortalTUSC1
OASIS PortalTUSC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUSC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUSC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUSC1
DgiDB (Drug Gene Interaction Database)TUSC1
DoCM (Curated mutations)TUSC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUSC1 (select a term)
intoGenTUSC1
Cancer3D=A HEF9http://cancer3d.org TARGET=Cancer3D>TUSC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610529   
Orphanet
DisGeNETTUSC1
MedgenTUSC1
Genetic Testing Registry TUSC1
NextProtQ2TAM9 [Medical]
TSGene286319
GENETestsTUSC1
Target ValidationTUSC1
Huge Navigator TUSC1 [HugePedia]
snp3D : Map Gene to Disease286319
BioCentury BCIQTUSC1
ClinGenTUSC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286319
Chemical/Pharm GKB GenePA134889281
Clinical trialTUSC1
Miscellaneous
canSAR (ICR)TUSC1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUSC1
EVEXTUSC1
GoPubMedTUSC1
iHOPTUSC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:40:15 CET 2017

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