Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TUSC1 (tumor suppressor candidate 1)

Identity

Alias (NCBI)CCDC89B
TSG-9
TSG9
HGNC (Hugo) TUSC1
HGNC Alias symbTSG-9
CCDC89B
LocusID (NCBI) 286319
Atlas_Id 42955
Location 9p21.2  [Link to chromosome band 9p21]
Location_base_pair Starts at 25676389 and ends at 25678858 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TUSC1   31010
Cards
Entrez_Gene (NCBI)TUSC1    tumor suppressor candidate 1
AliasesCCDC89B; TSG-9; TSG9
GeneCards (Weizmann)TUSC1
Ensembl hg19 (Hinxton)ENSG00000198680 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198680 [Gene_View]  ENSG00000198680 [Sequence]  chr9:25676389-25678858 [Contig_View]  TUSC1 [Vega]
ICGC DataPortalENSG00000198680
TCGA cBioPortalTUSC1
AceView (NCBI)TUSC1
Genatlas (Paris)TUSC1
SOURCE (Princeton)TUSC1
Genetics Home Reference (NIH)TUSC1
Genomic and cartography
GoldenPath hg38 (UCSC)TUSC1  -     chr9:25676389-25678858 -  9p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUSC1  -     9p21.2   [Description]    (hg19-Feb_2009)
GoldenPathTUSC1 - 9p21.2 [CytoView hg19]  TUSC1 - 9p21.2 [CytoView hg38]
ImmunoBaseENSG00000198680
Genome Data Viewer NCBITUSC1 [Mapview hg19]  
OMIM610529   
Gene and transcription
Genbank (Entrez)AY168647 BC017510 BC028316 BC036931 BC046919
RefSeq transcript (Entrez)NM_001004125
Consensus coding sequences : CCDS (NCBI)TUSC1
Gene ExpressionTUSC1 [ NCBI-GEO ]   TUSC1 [ EBI - ARRAY_EXPRESS ]   TUSC1 [ SEEK ]   TUSC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUSC1 [ Firebrowse - Broad ]
GenevisibleExpression of TUSC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286319
GTEX Portal (Tissue expression)TUSC1
Human Protein AtlasENSG00000198680-TUSC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TAM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TAM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TAM9
PhosPhoSitePlusQ2TAM9
Domains : Interpro (EBI)CCDC89-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TUSC1
SuperfamilyQ2TAM9
AlphaFold pdb e-kbQ2TAM9   
Human Protein Atlas [tissue]ENSG00000198680-TUSC1 [tissue]
HPRD18247
Protein Interaction databases
DIP (DOE-UCLA)Q2TAM9
IntAct (EBI)Q2TAM9
BioGRIDTUSC1
STRING (EMBL)TUSC1
ZODIACTUSC1
Ontologies - Pathways
QuickGOQ2TAM9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTUSC1
Atlas of Cancer Signalling NetworkTUSC1
Wikipedia pathwaysTUSC1
Orthology - Evolution
OrthoDB286319
GeneTree (enSembl)ENSG00000198680
Phylogenetic Trees/Animal Genes : TreeFamTUSC1
Homologs : HomoloGeneTUSC1
Homology/Alignments : Family Browser (UCSC)TUSC1
Gene fusions - Rearrangements
Fusion : QuiverTUSC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUSC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUSC1
dbVarTUSC1
ClinVarTUSC1
MonarchTUSC1
1000_GenomesTUSC1 
Exome Variant ServerTUSC1
GNOMAD BrowserENSG00000198680
Varsome BrowserTUSC1
ACMGTUSC1 variants
VarityQ2TAM9
Genomic Variants (DGV)TUSC1 [DGVbeta]
DECIPHERTUSC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUSC1 
Mutations
ICGC Data PortalTUSC1 
TCGA Data PortalTUSC1 
Broad Tumor PortalTUSC1
OASIS PortalTUSC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUSC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTUSC1
Mutations and Diseases : HGMDTUSC1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTUSC1
DgiDB (Drug Gene Interaction Database)TUSC1
DoCM (Curated mutations)TUSC1
CIViC (Clinical Interpretations of Variants in Cancer)TUSC1
Cancer3DTUSC1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610529   
Orphanet
DisGeNETTUSC1
MedgenTUSC1
Genetic Testing Registry TUSC1
NextProtQ2TAM9 [Medical]
GENETestsTUSC1
Target ValidationTUSC1
Huge Navigator TUSC1 [HugePedia]
ClinGenTUSC1
Clinical trials, drugs, therapy
MyCancerGenomeTUSC1
Protein Interactions : CTDTUSC1
Pharm GKB GenePA134889281
PharosQ2TAM9
Clinical trialTUSC1
Miscellaneous
canSAR (ICR)TUSC1
HarmonizomeTUSC1
DataMed IndexTUSC1
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTUSC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:52 CEST 2021

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