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TVP23A (trans-golgi network vesicle protein 23 homolog A)

Identity

Alias (NCBI)FAM18A
YDR084C
HGNC (Hugo) TVP23A
HGNC Alias symbYDR084C
HGNC Previous nameFAM18A
HGNC Previous namefamily with sequence similarity 18, member A
 trans-golgi network vesicle protein 23 homolog A (S. cerevisiae)
LocusID (NCBI) 780776
Atlas_Id 75382
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 10766675 and ends at 10818794 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TVP23A   20398
Cards
Entrez_Gene (NCBI)TVP23A    trans-golgi network vesicle protein 23 homolog A
AliasesFAM18A; YDR084C
GeneCards (Weizmann)TVP23A
Ensembl hg19 (Hinxton)ENSG00000166676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166676 [Gene_View]  ENSG00000166676 [Sequence]  chr16:10766675-10818794 [Contig_View]  TVP23A [Vega]
ICGC DataPortalENSG00000166676
TCGA cBioPortalTVP23A
AceView (NCBI)TVP23A
Genatlas (Paris)TVP23A
SOURCE (Princeton)TVP23A
Genetics Home Reference (NIH)TVP23A
Genomic and cartography
GoldenPath hg38 (UCSC)TVP23A  -     chr16:10766675-10818794 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TVP23A  -     16p13.13   [Description]    (hg19-Feb_2009)
GoldenPathTVP23A - 16p13.13 [CytoView hg19]  TVP23A - 16p13.13 [CytoView hg38]
ImmunoBaseENSG00000166676
Genome Data Viewer NCBITVP23A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK124106 AK294418 AL833564 BC050569 BC146882
RefSeq transcript (Entrez)NM_001079512 NM_001318873
Consensus coding sequences : CCDS (NCBI)TVP23A
Gene ExpressionTVP23A [ NCBI-GEO ]   TVP23A [ EBI - ARRAY_EXPRESS ]   TVP23A [ SEEK ]   TVP23A [ MEM ]
Gene Expression Viewer (FireBrowse)TVP23A [ Firebrowse - Broad ]
GenevisibleExpression of TVP23A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)780776
GTEX Portal (Tissue expression)TVP23A
Human Protein AtlasENSG00000166676-TVP23A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NH52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NH52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NH52
PhosPhoSitePlusA6NH52
Domains : Interpro (EBI)TVP23-like   
Domain families : Pfam (Sanger)DUF846 (PF05832)   
Domain families : Pfam (NCBI)pfam05832   
Conserved Domain (NCBI)TVP23A
SuperfamilyA6NH52
AlphaFold pdb e-kbA6NH52   
Human Protein Atlas [tissue]ENSG00000166676-TVP23A [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NH52
IntAct (EBI)A6NH52
BioGRIDTVP23A
STRING (EMBL)TVP23A
ZODIACTVP23A
Ontologies - Pathways
QuickGOA6NH52
Ontology : AmiGOprotein binding  protein secretion  vesicle-mediated transport  integral component of Golgi membrane  
Ontology : EGO-EBIprotein binding  protein secretion  vesicle-mediated transport  integral component of Golgi membrane  
NDEx NetworkTVP23A
Atlas of Cancer Signalling NetworkTVP23A
Wikipedia pathwaysTVP23A
Orthology - Evolution
OrthoDB780776
GeneTree (enSembl)ENSG00000166676
Phylogenetic Trees/Animal Genes : TreeFamTVP23A
Homologs : HomoloGeneTVP23A
Homology/Alignments : Family Browser (UCSC)TVP23A
Gene fusions - Rearrangements
Fusion : QuiverTVP23A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTVP23A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TVP23A
dbVarTVP23A
ClinVarTVP23A
MonarchTVP23A
1000_GenomesTVP23A 
Exome Variant ServerTVP23A
GNOMAD BrowserENSG00000166676
Varsome BrowserTVP23A
ACMGTVP23A variants
VarityA6NH52
Genomic Variants (DGV)TVP23A [DGVbeta]
DECIPHERTVP23A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTVP23A 
Mutations
ICGC Data PortalTVP23A 
TCGA Data PortalTVP23A 
Broad Tumor PortalTVP23A
OASIS PortalTVP23A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTVP23A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTVP23A
Mutations and Diseases : HGMDTVP23A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTVP23A
DgiDB (Drug Gene Interaction Database)TVP23A
DoCM (Curated mutations)TVP23A
CIViC (Clinical Interpretations of Variants in Cancer)TVP23A
Cancer3DTVP23A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTVP23A
MedgenTVP23A
Genetic Testing Registry TVP23A
NextProtA6NH52 [Medical]
GENETestsTVP23A
Target ValidationTVP23A
Huge Navigator TVP23A [HugePedia]
ClinGenTVP23A
Clinical trials, drugs, therapy
MyCancerGenomeTVP23A
Protein Interactions : CTDTVP23A
Pharm GKB GenePA134902394
PharosA6NH52
Clinical trialTVP23A
Miscellaneous
canSAR (ICR)TVP23A
HarmonizomeTVP23A
DataMed IndexTVP23A
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTVP23A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:36 CEST 2021

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