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TVP23A (trans-golgi network vesicle protein 23 homolog A)

Identity

Alias_namesFAM18A
family with sequence similarity 18, member A
trans-golgi network vesicle protein 23 homolog A (S. cerevisiae)
Alias_symbol (synonym)YDR084C
Other alias
HGNC (Hugo) TVP23A
LocusID (NCBI) 780776
Atlas_Id 75382
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 10766676 and ends at 10818794 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TVP23A   20398
Cards
Entrez_Gene (NCBI)TVP23A  780776  trans-golgi network vesicle protein 23 homolog A
AliasesFAM18A; YDR084C
GeneCards (Weizmann)TVP23A
Ensembl hg19 (Hinxton)ENSG00000166676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166676 [Gene_View]  chr16:10766676-10818794 [Contig_View]  TVP23A [Vega]
ICGC DataPortalENSG00000166676
TCGA cBioPortalTVP23A
AceView (NCBI)TVP23A
Genatlas (Paris)TVP23A
WikiGenes780776
SOURCE (Princeton)TVP23A
Genetics Home Reference (NIH)TVP23A
Genomic and cartography
GoldenPath hg38 (UCSC)TVP23A  -     chr16:10766676-10818794 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TVP23A  -     16p13.13   [Description]    (hg19-Feb_2009)
EnsemblTVP23A - 16p13.13 [CytoView hg19]  TVP23A - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBITVP23A [Mapview hg19]  TVP23A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124106 AK294418 AL833564 BC050569 BC146882
RefSeq transcript (Entrez)NM_001079512 NM_001318873
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TVP23A
Cluster EST : UnigeneHs.371576 [ NCBI ]
CGAP (NCI)Hs.371576
Alternative Splicing GalleryENSG00000166676
Gene ExpressionTVP23A [ NCBI-GEO ]   TVP23A [ EBI - ARRAY_EXPRESS ]   TVP23A [ SEEK ]   TVP23A [ MEM ]
Gene Expression Viewer (FireBrowse)TVP23A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)780776
GTEX Portal (Tissue expression)TVP23A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NH52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NH52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NH52
Splice isoforms : SwissVarA6NH52
PhosPhoSitePlusA6NH52
Domains : Interpro (EBI)DUF846_euk   
Domain families : Pfam (Sanger)DUF846 (PF05832)   
Domain families : Pfam (NCBI)pfam05832   
Conserved Domain (NCBI)TVP23A
DMDM Disease mutations780776
Blocks (Seattle)TVP23A
SuperfamilyA6NH52
Human Protein AtlasENSG00000166676
Peptide AtlasA6NH52
IPIIPI00176983   IPI00921929   
Protein Interaction databases
DIP (DOE-UCLA)A6NH52
IntAct (EBI)A6NH52
FunCoupENSG00000166676
BioGRIDTVP23A
STRING (EMBL)TVP23A
ZODIACTVP23A
Ontologies - Pathways
QuickGOA6NH52
Ontology : AmiGOprotein secretion  vesicle-mediated transport  integral component of Golgi membrane  
Ontology : EGO-EBIprotein secretion  vesicle-mediated transport  integral component of Golgi membrane  
NDEx NetworkTVP23A
Atlas of Cancer Signalling NetworkTVP23A
Wikipedia pathwaysTVP23A
Orthology - Evolution
OrthoDB780776
GeneTree (enSembl)ENSG00000166676
Phylogenetic Trees/Animal Genes : TreeFamTVP23A
HOVERGENA6NH52
HOGENOMA6NH52
Homologs : HomoloGeneTVP23A
Homology/Alignments : Family Browser (UCSC)TVP23A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTVP23A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TVP23A
dbVarTVP23A
ClinVarTVP23A
1000_GenomesTVP23A 
Exome Variant ServerTVP23A
ExAC (Exome Aggregation Consortium)TVP23A (select the gene name)
Genetic variants : HAPMAP780776
Genomic Variants (DGV)TVP23A [DGVbeta]
DECIPHERTVP23A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTVP23A 
Mutations
ICGC Data PortalTVP23A 
TCGA Data PortalTVP23A 
Broad Tumor PortalTVP23A
OASIS PortalTVP23A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTVP23A
BioMutasearch TVP23A
DgiDB (Drug Gene Interaction Database)TVP23A
DoCM (Curated mutations)TVP23A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TVP23A (select a term)
intoGenTVP23A
Cancer3DTVP23A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTVP23A
Genetic Testing Registry TVP23A
NextProtA6NH52 [Medical]
TSGene780776
GENETestsTVP23A
Target ValidationTVP23A
Huge Navigator TVP23A [HugePedia]
snp3D : Map Gene to Disease780776
BioCentury BCIQTVP23A
ClinGenTVP23A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD780776
Chemical/Pharm GKB GenePA134902394
Clinical trialTVP23A
Miscellaneous
canSAR (ICR)TVP23A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTVP23A
EVEXTVP23A
GoPubMedTVP23A
iHOPTVP23A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:03 CEST 2017

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