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TVP23B (trans-golgi network vesicle protein 23 homolog B)

Identity

Alias_namesFAM18B
FAM18B1
family with sequence similarity 18, member B
family with sequence similarity 18, member B1
trans-golgi network vesicle protein 23 homolog B (S. cerevisiae)
Alias_symbol (synonym)CGI-148
YDR084C
Other aliasNPD008
HGNC (Hugo) TVP23B
LocusID (NCBI) 51030
Atlas_Id 75383
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18781314 and ends at 18806713 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TVP23B (17p11.2) / CDRT4 (17p12)TVP23B (17p11.2) / MAP2K3 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TVP23B   20399
Cards
Entrez_Gene (NCBI)TVP23B  51030  trans-golgi network vesicle protein 23 homolog B
AliasesCGI-148; FAM18B; FAM18B1; NPD008; 
YDR084C
GeneCards (Weizmann)TVP23B
Ensembl hg19 (Hinxton)ENSG00000171928 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171928 [Gene_View]  chr17:18781314-18806713 [Contig_View]  TVP23B [Vega]
ICGC DataPortalENSG00000171928
TCGA cBioPortalTVP23B
AceView (NCBI)TVP23B
Genatlas (Paris)TVP23B
WikiGenes51030
SOURCE (Princeton)TVP23B
Genetics Home Reference (NIH)TVP23B
Genomic and cartography
GoldenPath hg38 (UCSC)TVP23B  -     chr17:18781314-18806713 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TVP23B  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblTVP23B - 17p11.2 [CytoView hg19]  TVP23B - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBITVP23B [Mapview hg19]  TVP23B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151906 AF223467 AK128119 AK290813 BC008430
RefSeq transcript (Entrez)NM_001316919 NM_001316920 NM_001316921 NM_001316922 NM_001316923 NM_001316924 NM_016078
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TVP23B
Cluster EST : UnigeneHs.87295 [ NCBI ]
CGAP (NCI)Hs.87295
Alternative Splicing GalleryENSG00000171928
Gene ExpressionTVP23B [ NCBI-GEO ]   TVP23B [ EBI - ARRAY_EXPRESS ]   TVP23B [ SEEK ]   TVP23B [ MEM ]
Gene Expression Viewer (FireBrowse)TVP23B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51030
GTEX Portal (Tissue expression)TVP23B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYZ1
Splice isoforms : SwissVarQ9NYZ1
PhosPhoSitePlusQ9NYZ1
Domains : Interpro (EBI)DUF846_euk   
Domain families : Pfam (Sanger)DUF846 (PF05832)   
Domain families : Pfam (NCBI)pfam05832   
Conserved Domain (NCBI)TVP23B
DMDM Disease mutations51030
Blocks (Seattle)TVP23B
SuperfamilyQ9NYZ1
Human Protein AtlasENSG00000171928
Peptide AtlasQ9NYZ1
HPRD13293
IPIIPI00386220   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYZ1
IntAct (EBI)Q9NYZ1
FunCoupENSG00000171928
BioGRIDTVP23B
STRING (EMBL)TVP23B
ZODIACTVP23B
Ontologies - Pathways
QuickGOQ9NYZ1
Ontology : AmiGOprotein secretion  vesicle-mediated transport  integral component of Golgi membrane  
Ontology : EGO-EBIprotein secretion  vesicle-mediated transport  integral component of Golgi membrane  
NDEx NetworkTVP23B
Atlas of Cancer Signalling NetworkTVP23B
Wikipedia pathwaysTVP23B
Orthology - Evolution
OrthoDB51030
GeneTree (enSembl)ENSG00000171928
Phylogenetic Trees/Animal Genes : TreeFamTVP23B
HOVERGENQ9NYZ1
HOGENOMQ9NYZ1
Homologs : HomoloGeneTVP23B
Homology/Alignments : Family Browser (UCSC)TVP23B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTVP23B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TVP23B
dbVarTVP23B
ClinVarTVP23B
1000_GenomesTVP23B 
Exome Variant ServerTVP23B
ExAC (Exome Aggregation Consortium)TVP23B (select the gene name)
Genetic variants : HAPMAP51030
Genomic Variants (DGV)TVP23B [DGVbeta]
DECIPHERTVP23B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTVP23B 
Mutations
ICGC Data PortalTVP23B 
TCGA Data PortalTVP23B 
Broad Tumor PortalTVP23B
OASIS PortalTVP23B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTVP23B
BioMutasearch TVP23B
DgiDB (Drug Gene Interaction Database)TVP23B
DoCM (Curated mutations)TVP23B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TVP23B (select a term)
intoGenTVP23B
Cancer3DTVP23B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTVP23B
Genetic Testing Registry TVP23B
NextProtQ9NYZ1 [Medical]
TSGene51030
GENETestsTVP23B
Target ValidationTVP23B
Huge Navigator TVP23B [HugePedia]
snp3D : Map Gene to Disease51030
BioCentury BCIQTVP23B
ClinGenTVP23B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51030
Chemical/Pharm GKB GenePA134871046
Clinical trialTVP23B
Miscellaneous
canSAR (ICR)TVP23B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTVP23B
EVEXTVP23B
GoPubMedTVP23B
iHOPTVP23B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:03 CEST 2017

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