Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TVP23C (trans-golgi network vesicle protein 23 homolog C)

Identity

Alias_namesFAM18B2
family with sequence similarity 18, member B2
trans-golgi network vesicle protein 23 homolog C (S. cerevisiae)
Alias_symbol (synonym)MGC8763
Other alias
HGNC (Hugo) TVP23C
LocusID (NCBI) 201158
Atlas_Id 75384
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 15536980 and ends at 15563631 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FERMT1 (20p12.3) / TVP23C (17p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TVP23C   30453
Cards
Entrez_Gene (NCBI)TVP23C  201158  trans-golgi network vesicle protein 23 homolog C
AliasesFAM18B2
GeneCards (Weizmann)TVP23C
Ensembl hg19 (Hinxton)ENSG00000175106 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175106 [Gene_View]  chr17:15536980-15563631 [Contig_View]  TVP23C [Vega]
ICGC DataPortalENSG00000175106
TCGA cBioPortalTVP23C
AceView (NCBI)TVP23C
Genatlas (Paris)TVP23C
WikiGenes201158
SOURCE (Princeton)TVP23C
Genetics Home Reference (NIH)TVP23C
Genomic and cartography
GoldenPath hg38 (UCSC)TVP23C  -     chr17:15536980-15563631 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TVP23C  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblTVP23C - 17p12 [CytoView hg19]  TVP23C - 17p12 [CytoView hg38]
Mapping of homologs : NCBITVP23C [Mapview hg19]  TVP23C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK310363 BC011952 BQ448398 BU754306 DC393880
RefSeq transcript (Entrez)NM_001135036 NM_145301
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TVP23C
Cluster EST : UnigeneHs.164595 [ NCBI ]
CGAP (NCI)Hs.164595
Alternative Splicing GalleryENSG00000175106
Gene ExpressionTVP23C [ NCBI-GEO ]   TVP23C [ EBI - ARRAY_EXPRESS ]   TVP23C [ SEEK ]   TVP23C [ MEM ]
Gene Expression Viewer (FireBrowse)TVP23C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201158
GTEX Portal (Tissue expression)TVP23C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96ET8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96ET8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96ET8
Splice isoforms : SwissVarQ96ET8
PhosPhoSitePlusQ96ET8
Domains : Interpro (EBI)DUF846_euk   
Domain families : Pfam (Sanger)DUF846 (PF05832)   
Domain families : Pfam (NCBI)pfam05832   
Conserved Domain (NCBI)TVP23C
DMDM Disease mutations201158
Blocks (Seattle)TVP23C
SuperfamilyQ96ET8
Human Protein AtlasENSG00000175106
Peptide AtlasQ96ET8
HPRD14125
IPIIPI00101298   IPI00795656   IPI00654809   IPI00974128   
Protein Interaction databases
DIP (DOE-UCLA)Q96ET8
IntAct (EBI)Q96ET8
FunCoupENSG00000175106
BioGRIDTVP23C
STRING (EMBL)TVP23C
ZODIACTVP23C
Ontologies - Pathways
QuickGOQ96ET8
Ontology : AmiGOprotein secretion  vesicle-mediated transport  integral component of Golgi membrane  
Ontology : EGO-EBIprotein secretion  vesicle-mediated transport  integral component of Golgi membrane  
NDEx NetworkTVP23C
Atlas of Cancer Signalling NetworkTVP23C
Wikipedia pathwaysTVP23C
Orthology - Evolution
OrthoDB201158
GeneTree (enSembl)ENSG00000175106
Phylogenetic Trees/Animal Genes : TreeFamTVP23C
HOVERGENQ96ET8
HOGENOMQ96ET8
Homologs : HomoloGeneTVP23C
Homology/Alignments : Family Browser (UCSC)TVP23C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTVP23C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TVP23C
dbVarTVP23C
ClinVarTVP23C
1000_GenomesTVP23C 
Exome Variant ServerTVP23C
ExAC (Exome Aggregation Consortium)TVP23C (select the gene name)
Genetic variants : HAPMAP201158
Genomic Variants (DGV)TVP23C [DGVbeta]
DECIPHERTVP23C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTVP23C 
Mutations
ICGC Data PortalTVP23C 
TCGA Data PortalTVP23C 
Broad Tumor PortalTVP23C
OASIS PortalTVP23C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTVP23C
BioMutasearch TVP23C
DgiDB (Drug Gene Interaction Database)TVP23C
DoCM (Curated mutations)TVP23C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TVP23C (select a term)
intoGenTVP23C
Cancer3DTVP23C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTVP23C
Genetic Testing Registry TVP23C
NextProtQ96ET8 [Medical]
TSGene201158
GENETestsTVP23C
Target ValidationTVP23C
Huge Navigator TVP23C [HugePedia]
snp3D : Map Gene to Disease201158
BioCentury BCIQTVP23C
ClinGenTVP23C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201158
Chemical/Pharm GKB GenePA142671894
Clinical trialTVP23C
Miscellaneous
canSAR (ICR)TVP23C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTVP23C
EVEXTVP23C
GoPubMedTVP23C
iHOPTVP23C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:47:52 CEST 2017

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