Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TWISTNB (TWIST neighbor)

Identity

Other alias-
HGNC (Hugo) TWISTNB
LocusID (NCBI) 221830
Atlas_Id 56990
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 19695462 and ends at 19709037 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TWISTNB   18027
Cards
Entrez_Gene (NCBI)TWISTNB  221830  TWIST neighbor
Aliases
GeneCards (Weizmann)TWISTNB
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:19695462-19709037 [Contig_View]  TWISTNB [Vega]
TCGA cBioPortalTWISTNB
AceView (NCBI)TWISTNB
Genatlas (Paris)TWISTNB
WikiGenes221830
SOURCE (Princeton)TWISTNB
Genetics Home Reference (NIH)TWISTNB
Genomic and cartography
GoldenPath hg38 (UCSC)TWISTNB  -     chr7:19695462-19709037 -  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TWISTNB  -     7p21.1   [Description]    (hg19-Feb_2009)
EnsemblTWISTNB - 7p21.1 [CytoView hg19]  TWISTNB - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBITWISTNB [Mapview hg19]  TWISTNB [Mapview hg38]
OMIM608312   
Gene and transcription
Genbank (Entrez)AK090846 AK301329 BC013179 BC014574 BC056267
RefSeq transcript (Entrez)NM_001002926
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TWISTNB
Cluster EST : UnigeneHs.353035 [ NCBI ]
CGAP (NCI)Hs.353035
Gene ExpressionTWISTNB [ NCBI-GEO ]   TWISTNB [ EBI - ARRAY_EXPRESS ]   TWISTNB [ SEEK ]   TWISTNB [ MEM ]
Gene Expression Viewer (FireBrowse)TWISTNB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221830
GTEX Portal (Tissue expression)TWISTNB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3B726   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3B726  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3B726
Splice isoforms : SwissVarQ3B726
PhosPhoSitePlusQ3B726
Domains : Interpro (EBI)RNA_pol_Rpb7_N   
Domain families : Pfam (Sanger)SHS2_Rpb7-N (PF03876)   
Domain families : Pfam (NCBI)pfam03876   
Conserved Domain (NCBI)TWISTNB
DMDM Disease mutations221830
Blocks (Seattle)TWISTNB
SuperfamilyQ3B726
Peptide AtlasQ3B726
IPIIPI00005477   
Protein Interaction databases
DIP (DOE-UCLA)Q3B726
IntAct (EBI)Q3B726
BioGRIDTWISTNB
STRING (EMBL)TWISTNB
ZODIACTWISTNB
Ontologies - Pathways
QuickGOQ3B726
Ontology : AmiGORNA polymerase I activity  nucleoplasm  DNA-directed RNA polymerase I complex  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  positive regulation of gene expression, epigenetic  cellular response to leukemia inhibitory factor  
Ontology : EGO-EBIRNA polymerase I activity  nucleoplasm  DNA-directed RNA polymerase I complex  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  positive regulation of gene expression, epigenetic  cellular response to leukemia inhibitory factor  
Pathways : KEGGPurine metabolism    Pyrimidine metabolism    RNA polymerase   
NDEx NetworkTWISTNB
Atlas of Cancer Signalling NetworkTWISTNB
Wikipedia pathwaysTWISTNB
Orthology - Evolution
OrthoDB221830
Phylogenetic Trees/Animal Genes : TreeFamTWISTNB
HOVERGENQ3B726
HOGENOMQ3B726
Homologs : HomoloGeneTWISTNB
Homology/Alignments : Family Browser (UCSC)TWISTNB
Gene fusions - Rearrangements
Fusion: Tumor Portal TWISTNB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTWISTNB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TWISTNB
dbVarTWISTNB
ClinVarTWISTNB
1000_GenomesTWISTNB 
Exome Variant ServerTWISTNB
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP221830
Genomic Variants (DGV)TWISTNB [DGVbeta]
DECIPHERTWISTNB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTWISTNB 
Mutations
ICGC Data PortalTWISTNB 
TCGA Data PortalTWISTNB 
Broad Tumor PortalTWISTNB
OASIS PortalTWISTNB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTWISTNB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTWISTNB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TWISTNB
DgiDB (Drug Gene Interaction Database)TWISTNB
DoCM (Curated mutations)TWISTNB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TWISTNB (select a term)
intoGenTWISTNB
Cancer3DTWISTNB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608312   
Orphanet
MedgenTWISTNB
Genetic Testing Registry TWISTNB
NextProtQ3B726 [Medical]
TSGene221830
GENETestsTWISTNB
Target ValidationTWISTNB
Huge Navigator TWISTNB [HugePedia]
snp3D : Map Gene to Disease221830
BioCentury BCIQTWISTNB
ClinGenTWISTNB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221830
Chemical/Pharm GKB GenePA134878254
Clinical trialTWISTNB
Miscellaneous
canSAR (ICR)TWISTNB (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTWISTNB
EVEXTWISTNB
GoPubMedTWISTNB
iHOPTWISTNB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:16:12 CET 2017

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