Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TXLNA (taxilin alpha)

Identity

Alias_symbol (synonym)DKFZp451J0118
Other aliasIL14
TXLN
HGNC (Hugo) TXLNA
LocusID (NCBI) 200081
Atlas_Id 46367
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 32179744 and ends at 32198285 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HNRNPR (1p36.12) / TXLNA (1p35.1)SWAP70 (11p15.4) / TXLNA (1p35.1)TXLNA (1p35.1) / MRPL52 (14q11.2)
TXLNA (1p35.1) / TXLNA (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TXLNA   30685
Cards
Entrez_Gene (NCBI)TXLNA  200081  taxilin alpha
AliasesIL14; TXLN
GeneCards (Weizmann)TXLNA
Ensembl hg19 (Hinxton)ENSG00000084652 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000084652 [Gene_View]  chr1:32179744-32198285 [Contig_View]  TXLNA [Vega]
ICGC DataPortalENSG00000084652
TCGA cBioPortalTXLNA
AceView (NCBI)TXLNA
Genatlas (Paris)TXLNA
WikiGenes200081
SOURCE (Princeton)TXLNA
Genetics Home Reference (NIH)TXLNA
Genomic and cartography
GoldenPath hg38 (UCSC)TXLNA  -     chr1:32179744-32198285 +  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXLNA  -     1p35.2   [Description]    (hg19-Feb_2009)
EnsemblTXLNA - 1p35.2 [CytoView hg19]  TXLNA - 1p35.2 [CytoView hg38]
Mapping of homologs : NCBITXLNA [Mapview hg19]  TXLNA [Mapview hg38]
OMIM608676   
Gene and transcription
Genbank (Entrez)AF070546 AF516206 AK096161 AK096939 AL713662
RefSeq transcript (Entrez)NM_175852
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TXLNA
Cluster EST : UnigeneHs.17987 [ NCBI ]
CGAP (NCI)Hs.17987
Alternative Splicing GalleryENSG00000084652
Gene ExpressionTXLNA [ NCBI-GEO ]   TXLNA [ EBI - ARRAY_EXPRESS ]   TXLNA [ SEEK ]   TXLNA [ MEM ]
Gene Expression Viewer (FireBrowse)TXLNA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200081
GTEX Portal (Tissue expression)TXLNA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40222   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40222  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40222
Splice isoforms : SwissVarP40222
PhosPhoSitePlusP40222
Domains : Interpro (EBI)Taxilin_fam   
Domain families : Pfam (Sanger)Taxilin (PF09728)   
Domain families : Pfam (NCBI)pfam09728   
Conserved Domain (NCBI)TXLNA
DMDM Disease mutations200081
Blocks (Seattle)TXLNA
SuperfamilyP40222
Human Protein AtlasENSG00000084652
Peptide AtlasP40222
HPRD09408
IPIIPI00470779   IPI00816089   
Protein Interaction databases
DIP (DOE-UCLA)P40222
IntAct (EBI)P40222
FunCoupENSG00000084652
BioGRIDTXLNA
STRING (EMBL)TXLNA
ZODIACTXLNA
Ontologies - Pathways
QuickGOP40222
Ontology : AmiGOcytokine activity  protein binding  extracellular region  extracellular region  cytoplasm  exocytosis  cell proliferation  membrane  syntaxin binding  high molecular weight B cell growth factor receptor binding  B cell activation  
Ontology : EGO-EBIcytokine activity  protein binding  extracellular region  extracellular region  cytoplasm  exocytosis  cell proliferation  membrane  syntaxin binding  high molecular weight B cell growth factor receptor binding  B cell activation  
Pathways : BIOCARTACytokine Network [Genes]   
NDEx NetworkTXLNA
Atlas of Cancer Signalling NetworkTXLNA
Wikipedia pathwaysTXLNA
Orthology - Evolution
OrthoDB200081
GeneTree (enSembl)ENSG00000084652
Phylogenetic Trees/Animal Genes : TreeFamTXLNA
HOVERGENP40222
HOGENOMP40222
Homologs : HomoloGeneTXLNA
Homology/Alignments : Family Browser (UCSC)TXLNA
Gene fusions - Rearrangements
Fusion Cancer (Beijing)TXLNA [1p35.1]  -  MRPL52 [14q11.2]  [FUSC000766]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXLNA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXLNA
dbVarTXLNA
ClinVarTXLNA
1000_GenomesTXLNA 
Exome Variant ServerTXLNA
ExAC (Exome Aggregation Consortium)TXLNA (select the gene name)
Genetic variants : HAPMAP200081
Genomic Variants (DGV)TXLNA [DGVbeta]
DECIPHERTXLNA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXLNA 
Mutations
ICGC Data PortalTXLNA 
TCGA Data PortalTXLNA 
Broad Tumor PortalTXLNA
OASIS PortalTXLNA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXLNA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTXLNA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TXLNA
DgiDB (Drug Gene Interaction Database)TXLNA
DoCM (Curated mutations)TXLNA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TXLNA (select a term)
intoGenTXLNA
Cancer3DTXLNA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608676   
Orphanet
MedgenTXLNA
Genetic Testing Registry TXLNA
NextProtP40222 [Medical]
TSGene200081
GENETestsTXLNA
Target ValidationTXLNA
Huge Navigator TXLNA [HugePedia]
snp3D : Map Gene to Disease200081
BioCentury BCIQTXLNA
ClinGenTXLNA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200081
Chemical/Pharm GKB GenePA142670668
Clinical trialTXLNA
Miscellaneous
canSAR (ICR)TXLNA (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTXLNA
EVEXTXLNA
GoPubMedTXLNA
iHOPTXLNA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:01:25 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.