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TXLNB (taxilin beta)

Identity

Alias_namesC6orf198
chromosome 6 open reading frame 198
Alias_symbol (synonym)DKFZp451A175
MDP77
dJ522B19.2
Other aliasLST001
HGNC (Hugo) TXLNB
LocusID (NCBI) 167838
Atlas_Id 75387
Location 6q24.1  [Link to chromosome band 6q24]
Location_base_pair Starts at 139240061 and ends at 139292071 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
REV3L (6q21) / TXLNB (6q24.1)TXLNB (6q24.1) / CDC14A (1p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;6)(p21;q24) TXLNB/CDC14A


External links

Nomenclature
HGNC (Hugo)TXLNB   21617
Cards
Entrez_Gene (NCBI)TXLNB  167838  taxilin beta
AliasesC6orf198; LST001; MDP77; dJ522B19.2
GeneCards (Weizmann)TXLNB
Ensembl hg19 (Hinxton)ENSG00000164440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164440 [Gene_View]  ENSG00000164440 [Sequence]  chr6:139240061-139292071 [Contig_View]  TXLNB [Vega]
ICGC DataPortalENSG00000164440
TCGA cBioPortalTXLNB
AceView (NCBI)TXLNB
Genatlas (Paris)TXLNB
WikiGenes167838
SOURCE (Princeton)TXLNB
Genetics Home Reference (NIH)TXLNB
Genomic and cartography
GoldenPath hg38 (UCSC)TXLNB  -     chr6:139240061-139292071 -  6q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXLNB  -     6q24.1   [Description]    (hg19-Feb_2009)
EnsemblTXLNB - 6q24.1 [CytoView hg19]  TXLNB - 6q24.1 [CytoView hg38]
Mapping of homologs : NCBITXLNB [Mapview hg19]  TXLNB [Mapview hg38]
OMIM611438   
Gene and transcription
Genbank (Entrez)AB085905 AF111704 AK056970 AK314725 AL831988
RefSeq transcript (Entrez)NM_153235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TXLNB
Cluster EST : UnigeneHs.535820 [ NCBI ]
CGAP (NCI)Hs.535820
Alternative Splicing GalleryENSG00000164440
Gene ExpressionTXLNB [ NCBI-GEO ]   TXLNB [ EBI - ARRAY_EXPRESS ]   TXLNB [ SEEK ]   TXLNB [ MEM ]
Gene Expression Viewer (FireBrowse)TXLNB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)167838
GTEX Portal (Tissue expression)TXLNB
Human Protein AtlasENSG00000164440-TXLNB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3L3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3L3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3L3
Splice isoforms : SwissVarQ8N3L3
PhosPhoSitePlusQ8N3L3
Domains : Interpro (EBI)Taxilin_fam   
Domain families : Pfam (Sanger)Taxilin (PF09728)   
Domain families : Pfam (NCBI)pfam09728   
Conserved Domain (NCBI)TXLNB
DMDM Disease mutations167838
Blocks (Seattle)TXLNB
SuperfamilyQ8N3L3
Human Protein Atlas [tissue]ENSG00000164440-TXLNB [tissue]
Peptide AtlasQ8N3L3
HPRD10793
IPIIPI00456626   IPI00552160   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3L3
IntAct (EBI)Q8N3L3
FunCoupENSG00000164440
BioGRIDTXLNB
STRING (EMBL)TXLNB
ZODIACTXLNB
Ontologies - Pathways
QuickGOQ8N3L3
Ontology : AmiGOprotein binding  cytoplasm  syntaxin binding  
Ontology : EGO-EBIprotein binding  cytoplasm  syntaxin binding  
NDEx NetworkTXLNB
Atlas of Cancer Signalling NetworkTXLNB
Wikipedia pathwaysTXLNB
Orthology - Evolution
OrthoDB167838
GeneTree (enSembl)ENSG00000164440
Phylogenetic Trees/Animal Genes : TreeFamTXLNB
HOVERGENQ8N3L3
HOGENOMQ8N3L3
Homologs : HomoloGeneTXLNB
Homology/Alignments : Family Browser (UCSC)TXLNB
Gene fusions - Rearrangements
Fusion : QuiverTXLNB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXLNB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXLNB
dbVarTXLNB
ClinVarTXLNB
1000_GenomesTXLNB 
Exome Variant ServerTXLNB
ExAC (Exome Aggregation Consortium)ENSG00000164440
GNOMAD BrowserENSG00000164440
Varsome BrowserTXLNB
Genetic variants : HAPMAP167838
Genomic Variants (DGV)TXLNB [DGVbeta]
DECIPHERTXLNB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXLNB 
Mutations
ICGC Data PortalTXLNB 
TCGA Data PortalTXLNB 
Broad Tumor PortalTXLNB
OASIS PortalTXLNB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXLNB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTXLNB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TXLNB
DgiDB (Drug Gene Interaction Database)TXLNB
DoCM (Curated mutations)TXLNB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TXLNB (select a term)
intoGenTXLNB
Cancer3DTXLNB(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611438   
Orphanet
DisGeNETTXLNB
MedgenTXLNB
Genetic Testing Registry TXLNB
NextProtQ8N3L3 [Medical]
TSGene167838
GENETestsTXLNB
Target ValidationTXLNB
Huge Navigator TXLNB [HugePedia]
snp3D : Map Gene to Disease167838
BioCentury BCIQTXLNB
ClinGenTXLNB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD167838
Chemical/Pharm GKB GenePA134878600
Clinical trialTXLNB
Miscellaneous
canSAR (ICR)TXLNB (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTXLNB
EVEXTXLNB
GoPubMedTXLNB
iHOPTXLNB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 14:37:24 CEST 2018

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