Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TXLNG (taxilin gamma)

Identity

Alias (NCBI)CXorf15
ELRG
FIAT
LSR5
TXLNGX
HGNC (Hugo) TXLNG
HGNC Alias symbFLJ11209
LSR5
FIAT
MGC126621
MGC126625
TXLNGX
HGNC Alias namelipopolysaccharide specific response-5 protein
 factor inhibiting activating transcription factor 4 (ATF4)-mediated transcription
HGNC Previous nameCXorf15
HGNC Previous namechromosome X open reading frame 15
LocusID (NCBI) 55787
Atlas_Id 54740
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 16786466 and ends at 16844519 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
INTS4 (11q14.1) / TXLNG (Xp22.2)REPS2 (Xp22.2) / TXLNG (Xp22.2)TXLNG (Xp22.2) / GMPR (6p22.3)
TXLNG (Xp22.2) / SYAP1 (Xp22.2)REPS2 Xp22.2 / TXLNG Xp22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  REPS2/TXLNG (Xp22)
REPS2/TXLNG (Xp22)
TXLNG/SYAP1 (Xp22)

External links

Nomenclature
HGNC (Hugo)TXLNG   18578
Cards
Entrez_Gene (NCBI)TXLNG    taxilin gamma
AliasesCXorf15; ELRG; FIAT; LSR5; 
TXLNGX
GeneCards (Weizmann)TXLNG
Ensembl hg19 (Hinxton)ENSG00000086712 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000086712 [Gene_View]  ENSG00000086712 [Sequence]  chrX:16786466-16844519 [Contig_View]  TXLNG [Vega]
ICGC DataPortalENSG00000086712
TCGA cBioPortalTXLNG
AceView (NCBI)TXLNG
Genatlas (Paris)TXLNG
SOURCE (Princeton)TXLNG
Genetics Home Reference (NIH)TXLNG
Genomic and cartography
GoldenPath hg38 (UCSC)TXLNG  -     chrX:16786466-16844519 +  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXLNG  -     Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPathTXLNG - Xp22.2 [CytoView hg19]  TXLNG - Xp22.2 [CytoView hg38]
ImmunoBaseENSG00000086712
genome Data Viewer NCBITXLNG [Mapview hg19]  
OMIM300677   
Gene and transcription
Genbank (Entrez)AA731379 AF143740 AK002071 AK090800 AK123142
RefSeq transcript (Entrez)NM_001168683 NM_018360
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TXLNG
Alternative Splicing GalleryENSG00000086712
Gene ExpressionTXLNG [ NCBI-GEO ]   TXLNG [ EBI - ARRAY_EXPRESS ]   TXLNG [ SEEK ]   TXLNG [ MEM ]
Gene Expression Viewer (FireBrowse)TXLNG [ Firebrowse - Broad ]
GenevisibleExpression of TXLNG in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55787
GTEX Portal (Tissue expression)TXLNG
Human Protein AtlasENSG00000086712-TXLNG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUQ3
Splice isoforms : SwissVarQ9NUQ3
PhosPhoSitePlusQ9NUQ3
Domains : Interpro (EBI)Taxilin_fam   
Domain families : Pfam (Sanger)Taxilin (PF09728)   
Domain families : Pfam (NCBI)pfam09728   
Conserved Domain (NCBI)TXLNG
Blocks (Seattle)TXLNG
SuperfamilyQ9NUQ3
Human Protein Atlas [tissue]ENSG00000086712-TXLNG [tissue]
Peptide AtlasQ9NUQ3
HPRD06478
IPIIPI00019994   IPI00737270   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUQ3
IntAct (EBI)Q9NUQ3
BioGRIDTXLNG
STRING (EMBL)TXLNG
ZODIACTXLNG
Ontologies - Pathways
QuickGOQ9NUQ3
Ontology : AmiGOcytosol  cell cycle  transcription factor binding  regulation of cell cycle process  syntaxin binding  regulation of bone mineralization  nuclear membrane  activating transcription factor binding  regulation of cell cycle  regulation of cell cycle  
Ontology : EGO-EBIcytosol  cell cycle  transcription factor binding  regulation of cell cycle process  syntaxin binding  regulation of bone mineralization  nuclear membrane  activating transcription factor binding  regulation of cell cycle  regulation of cell cycle  
NDEx NetworkTXLNG
Atlas of Cancer Signalling NetworkTXLNG
Wikipedia pathwaysTXLNG
Orthology - Evolution
OrthoDB55787
GeneTree (enSembl)ENSG00000086712
Phylogenetic Trees/Animal Genes : TreeFamTXLNG
HOGENOMQ9NUQ3
Homologs : HomoloGeneTXLNG
Homology/Alignments : Family Browser (UCSC)TXLNG
Gene fusions - Rearrangements
Fusion : MitelmanREPS2/TXLNG [Xp22.2/Xp22.2]  
Fusion : MitelmanTXLNG/SYAP1 [Xp22.2/Xp22.2]  
Fusion PortalREPS2 Xp22.2 TXLNG Xp22.2 PRAD
Fusion : QuiverTXLNG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXLNG [hg38]
dbVarTXLNG
ClinVarTXLNG
MonarchTXLNG
1000_GenomesTXLNG 
Exome Variant ServerTXLNG
GNOMAD BrowserENSG00000086712
Varsome BrowserTXLNG
Genomic Variants (DGV)TXLNG [DGVbeta]
DECIPHERTXLNG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXLNG 
Mutations
ICGC Data PortalTXLNG 
TCGA Data PortalTXLNG 
Broad Tumor PortalTXLNG
OASIS PortalTXLNG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXLNG  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTXLNG
Mutations and Diseases : HGMDTXLNG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TXLNG
DgiDB (Drug Gene Interaction Database)TXLNG
DoCM (Curated mutations)TXLNG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TXLNG (select a term)
intoGenTXLNG
Cancer3DTXLNG(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300677   
Orphanet
DisGeNETTXLNG
MedgenTXLNG
Genetic Testing Registry TXLNG
NextProtQ9NUQ3 [Medical]
GENETestsTXLNG
Target ValidationTXLNG
Huge Navigator TXLNG [HugePedia]
ClinGenTXLNG
Clinical trials, drugs, therapy
MyCancerGenomeTXLNG
Protein Interactions : CTD
Pharm GKB GenePA38588
PharosQ9NUQ3
Clinical trialTXLNG
Miscellaneous
canSAR (ICR)TXLNG (select the gene name)
HarmonizomeTXLNG
DataMed IndexTXLNG
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTXLNG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jan 1 18:42:58 CET 2021
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