Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TXLNG (taxilin gamma)

Identity

Alias_namesCXorf15
chromosome X open reading frame 15
Alias_symbol (synonym)FLJ11209
LSR5
FIAT
MGC126621
MGC126625
TXLNGX
Other aliasELRG
HGNC (Hugo) TXLNG
LocusID (NCBI) 55787
Atlas_Id 54740
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 16804555 and ends at 16862642 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
INTS4 (11q14.1) / TXLNG (Xp22.2)REPS2 (Xp22.2) / TXLNG (Xp22.2)TXLNG (Xp22.2) / GMPR (6p22.3)
TXLNG (Xp22.2) / SYAP1 (Xp22.2)REPS2 Xp22.2 / TXLNG Xp22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TXLNG   18578
Cards
Entrez_Gene (NCBI)TXLNG  55787  taxilin gamma
AliasesCXorf15; ELRG; FIAT; LSR5; 
TXLNGX
GeneCards (Weizmann)TXLNG
Ensembl hg19 (Hinxton)ENSG00000086712 [Gene_View]  chrX:16804555-16862642 [Contig_View]  TXLNG [Vega]
Ensembl hg38 (Hinxton)ENSG00000086712 [Gene_View]  chrX:16804555-16862642 [Contig_View]  TXLNG [Vega]
ICGC DataPortalENSG00000086712
TCGA cBioPortalTXLNG
AceView (NCBI)TXLNG
Genatlas (Paris)TXLNG
WikiGenes55787
SOURCE (Princeton)TXLNG
Genetics Home Reference (NIH)TXLNG
Genomic and cartography
GoldenPath hg19 (UCSC)TXLNG  -     chrX:16804555-16862642 +  Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TXLNG  -     Xp22.2   [Description]    (hg38-Dec_2013)
EnsemblTXLNG - Xp22.2 [CytoView hg19]  TXLNG - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBITXLNG [Mapview hg19]  TXLNG [Mapview hg38]
OMIM300677   
Gene and transcription
Genbank (Entrez)AA731379 AF143740 AK002071 AK090800 AK123142
RefSeq transcript (Entrez)NM_001168683 NM_018360
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016267 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)TXLNG
Cluster EST : UnigeneHs.555961 [ NCBI ]
CGAP (NCI)Hs.555961
Alternative Splicing GalleryENSG00000086712
Gene ExpressionTXLNG [ NCBI-GEO ]   TXLNG [ EBI - ARRAY_EXPRESS ]   TXLNG [ SEEK ]   TXLNG [ MEM ]
Gene Expression Viewer (FireBrowse)TXLNG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55787
GTEX Portal (Tissue expression)TXLNG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUQ3
Splice isoforms : SwissVarQ9NUQ3
PhosPhoSitePlusQ9NUQ3
Domains : Interpro (EBI)Taxilin_fam   
Domain families : Pfam (Sanger)Taxilin (PF09728)   
Domain families : Pfam (NCBI)pfam09728   
Conserved Domain (NCBI)TXLNG
DMDM Disease mutations55787
Blocks (Seattle)TXLNG
SuperfamilyQ9NUQ3
Human Protein AtlasENSG00000086712
Peptide AtlasQ9NUQ3
HPRD06478
IPIIPI00019994   IPI00737270   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUQ3
IntAct (EBI)Q9NUQ3
FunCoupENSG00000086712
BioGRIDTXLNG
STRING (EMBL)TXLNG
ZODIACTXLNG
Ontologies - Pathways
QuickGOQ9NUQ3
Ontology : AmiGOcytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  regulation of cell cycle process  syntaxin binding  regulation of bone mineralization  nuclear membrane  protein heterodimerization activity  regulation of cell cycle  
Ontology : EGO-EBIcytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  regulation of cell cycle process  syntaxin binding  regulation of bone mineralization  nuclear membrane  protein heterodimerization activity  regulation of cell cycle  
NDEx NetworkTXLNG
Atlas of Cancer Signalling NetworkTXLNG
Wikipedia pathwaysTXLNG
Orthology - Evolution
OrthoDB55787
GeneTree (enSembl)ENSG00000086712
Phylogenetic Trees/Animal Genes : TreeFamTXLNG
HOVERGENQ9NUQ3
HOGENOMQ9NUQ3
Homologs : HomoloGeneTXLNG
Homology/Alignments : Family Browser (UCSC)TXLNG
Gene fusions - Rearrangements
Fusion : MitelmanREPS2/TXLNG [Xp22.2/Xp22.2]  [t(X;X)(p22;p22)]  
Fusion : MitelmanTXLNG/SYAP1 [Xp22.2/Xp22.2]  [t(X;X)(p22;p22)]  
Fusion: TCGAREPS2 Xp22.2 TXLNG Xp22.2 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXLNG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXLNG
dbVarTXLNG
ClinVarTXLNG
1000_GenomesTXLNG 
Exome Variant ServerTXLNG
ExAC (Exome Aggregation Consortium)TXLNG (select the gene name)
Genetic variants : HAPMAP55787
Genomic Variants (DGV)TXLNG [DGVbeta]
DECIPHER (Syndromes)X:16804555-16862642  ENSG00000086712
CONAN: Copy Number AnalysisTXLNG 
Mutations
ICGC Data PortalTXLNG 
TCGA Data PortalTXLNG 
Broad Tumor PortalTXLNG
OASIS PortalTXLNG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXLNG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTXLNG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TXLNG
DgiDB (Drug Gene Interaction Database)TXLNG
DoCM (Curated mutations)TXLNG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TXLNG (select a term)
intoGenTXLNG
Cancer3DTXLNG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300677   
Orphanet
MedgenTXLNG
Genetic Testing Registry TXLNG
NextProtQ9NUQ3 [Medical]
TSGene55787
GENETestsTXLNG
Huge Navigator TXLNG [HugePedia]
snp3D : Map Gene to Disease55787
BioCentury BCIQTXLNG
ClinGenTXLNG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55787
Chemical/Pharm GKB GenePA38588
Clinical trialTXLNG
Miscellaneous
canSAR (ICR)TXLNG (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTXLNG
EVEXTXLNG
GoPubMedTXLNG
iHOPTXLNG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:32:53 CET 2017

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