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TXLNGY (taxilin gamma pseudogene, Y-linked)

Identity

Alias_namesCYorf15A
CYorf15B
TXLNG2P
chromosome Y open reading frame 15A
chromosome Y open reading frame 15B
taxilin gamma 2, pseudogene
Other alias
HGNC (Hugo) TXLNGY
LocusID (NCBI) 246126
Atlas_Id 75388
Location Yq11.222  [Link to chromosome band Yq11]
Location_base_pair Starts at 19567382 and ends at 19590423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCNI (4q21.1) / TXLNGY (Yq11.222)NLGN4Y (Yq11.221) / TXLNGY (Yq11.222)TXLNGY (Yq11.222) / TXLNGY (Yq11.222)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TXLNGY   18473
Cards
Entrez_Gene (NCBI)TXLNGY  246126  taxilin gamma pseudogene, Y-linked
AliasesCYorf15A; CYorf15B; TXLNG2P
GeneCards (Weizmann)TXLNGY
Ensembl hg19 (Hinxton)ENSG00000131002 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131002 [Gene_View]  chrY:19567382-19590423 [Contig_View]  TXLNGY [Vega]
ICGC DataPortalENSG00000131002
TCGA cBioPortalTXLNGY
AceView (NCBI)TXLNGY
Genatlas (Paris)TXLNGY
WikiGenes246126
SOURCE (Princeton)TXLNGY
Genetics Home Reference (NIH)TXLNGY
Genomic and cartography
GoldenPath hg38 (UCSC)TXLNGY  -     chrY:19567382-19590423 +  Yq11.222   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXLNGY  -     Yq11.222   [Description]    (hg19-Feb_2009)
EnsemblTXLNGY - Yq11.222 [CytoView hg19]  TXLNGY - Yq11.222 [CytoView hg38]
Mapping of homologs : NCBITXLNGY [Mapview hg19]  TXLNGY [Mapview hg38]
OMIM400031   400032   
Gene and transcription
Genbank (Entrez)AF332224 AF332225 AI129169 AI828041 AK090535
RefSeq transcript (Entrez)NM_001005852
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TXLNGY
Cluster EST : UnigeneHs.522863 [ NCBI ]
CGAP (NCI)Hs.522863
Alternative Splicing GalleryENSG00000131002
Gene ExpressionTXLNGY [ NCBI-GEO ]   TXLNGY [ EBI - ARRAY_EXPRESS ]   TXLNGY [ SEEK ]   TXLNGY [ MEM ]
Gene Expression Viewer (FireBrowse)TXLNGY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)246126
GTEX Portal (Tissue expression)TXLNGY
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZA5
Splice isoforms : SwissVarQ9BZA5
PhosPhoSitePlusQ9BZA5
Domains : Interpro (EBI)Taxilin_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TXLNGY
DMDM Disease mutations246126
Blocks (Seattle)TXLNGY
SuperfamilyQ9BZA5
Human Protein AtlasENSG00000131002
Peptide AtlasQ9BZA5
HPRD10618
IPIIPI00384223   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZA5
IntAct (EBI)Q9BZA5
FunCoupENSG00000131002
BioGRIDTXLNGY
STRING (EMBL)TXLNGY
ZODIACTXLNGY
Ontologies - Pathways
QuickGOQ9BZA5
Ontology : AmiGOsyntaxin binding  
Ontology : EGO-EBIsyntaxin binding  
NDEx NetworkTXLNGY
Atlas of Cancer Signalling NetworkTXLNGY
Wikipedia pathwaysTXLNGY
Orthology - Evolution
OrthoDB246126
GeneTree (enSembl)ENSG00000131002
Phylogenetic Trees/Animal Genes : TreeFamTXLNGY
HOVERGENQ9BZA5
HOGENOMQ9BZA5
Homologs : HomoloGeneTXLNGY
Homology/Alignments : Family Browser (UCSC)TXLNGY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXLNGY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXLNGY
dbVarTXLNGY
ClinVarTXLNGY
1000_GenomesTXLNGY 
Exome Variant ServerTXLNGY
ExAC (Exome Aggregation Consortium)TXLNGY (select the gene name)
Genetic variants : HAPMAP246126
Genomic Variants (DGV)TXLNGY [DGVbeta]
DECIPHERTXLNGY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXLNGY 
Mutations
ICGC Data PortalTXLNGY 
TCGA Data PortalTXLNGY 
Broad Tumor PortalTXLNGY
OASIS PortalTXLNGY [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTXLNGY
BioMutasearch TXLNGY
DgiDB (Drug Gene Interaction Database)TXLNGY
DoCM (Curated mutations)TXLNGY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TXLNGY (select a term)
intoGenTXLNGY
Cancer3DTXLNGY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400031    400032   
Orphanet
MedgenTXLNGY
Genetic Testing Registry TXLNGY
NextProtQ9BZA5 [Medical]
TSGene246126
GENETestsTXLNGY
Target ValidationTXLNGY
Huge Navigator TXLNGY [HugePedia]
snp3D : Map Gene to Disease246126
BioCentury BCIQTXLNGY
ClinGenTXLNGY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD246126
Chemical/Pharm GKB GenePA38545
Clinical trialTXLNGY
Miscellaneous
canSAR (ICR)TXLNGY (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTXLNGY
EVEXTXLNGY
GoPubMedTXLNGY
iHOPTXLNGY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:04 CEST 2017

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