Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TXNDC12-AS1 (TXNDC12 antisense RNA 1)

Identity

Alias (NCBI)-
HGNC (Hugo) TXNDC12-AS1
LocusID (NCBI) 104355143
Atlas_Id 77235
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 52050918 and ends at 52052683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TXNDC12-AS1   30008
Cards
Entrez_Gene (NCBI)TXNDC12-AS1    TXNDC12 antisense RNA 1
Aliases
GeneCards (Weizmann)TXNDC12-AS1
Ensembl hg19 (Hinxton)ENSG00000228369 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228369 [Gene_View]  ENSG00000228369 [Sequence]  chr1:52050918-52052683 [Contig_View]  TXNDC12-AS1 [Vega]
ICGC DataPortalENSG00000228369
TCGA cBioPortalTXNDC12-AS1
AceView (NCBI)TXNDC12-AS1
Genatlas (Paris)TXNDC12-AS1
SOURCE (Princeton)TXNDC12-AS1
Genetics Home Reference (NIH)TXNDC12-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TXNDC12-AS1  -     chr1:52050918-52052683 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXNDC12-AS1  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathTXNDC12-AS1 - 1p32.3 [CytoView hg19]  TXNDC12-AS1 - 1p32.3 [CytoView hg38]
ImmunoBaseENSG00000228369
Genome Data Viewer NCBITXNDC12-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI221303
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TXNDC12-AS1
Gene ExpressionTXNDC12-AS1 [ NCBI-GEO ]   TXNDC12-AS1 [ EBI - ARRAY_EXPRESS ]   TXNDC12-AS1 [ SEEK ]   TXNDC12-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TXNDC12-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of TXNDC12-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)104355143
GTEX Portal (Tissue expression)TXNDC12-AS1
Human Protein AtlasENSG00000228369-TXNDC12-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TXNDC12-AS1
Human Protein Atlas [tissue]ENSG00000228369-TXNDC12-AS1 [tissue]
Protein Interaction databases
BioGRIDTXNDC12-AS1
STRING (EMBL)TXNDC12-AS1
ZODIACTXNDC12-AS1
Ontologies - Pathways
Litterature
GeneRIFsGene References Into Functions (Entrez)
EVEXTXNDC12-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:37 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.