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TXNDC15 (thioredoxin domain containing 15)

Identity

Alias_namesC5orf14
chromosome 5 open reading frame 14
Alias_symbol (synonym)2310047H23Rik
FLJ22625
Other aliasUNQ335
HGNC (Hugo) TXNDC15
LocusID (NCBI) 79770
Atlas_Id 54742
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 134873770 and ends at 134901633 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TXNDC15 (5q31.1) / ARPC2 (2q35)TXNDC15 5q31.1 / ARPC2 2q35

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TXNDC15   20652
Cards
Entrez_Gene (NCBI)TXNDC15  79770  thioredoxin domain containing 15
AliasesC5orf14; UNQ335
GeneCards (Weizmann)TXNDC15
Ensembl hg19 (Hinxton)ENSG00000113621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113621 [Gene_View]  chr5:134873770-134901633 [Contig_View]  TXNDC15 [Vega]
ICGC DataPortalENSG00000113621
TCGA cBioPortalTXNDC15
AceView (NCBI)TXNDC15
Genatlas (Paris)TXNDC15
WikiGenes79770
SOURCE (Princeton)TXNDC15
Genetics Home Reference (NIH)TXNDC15
Genomic and cartography
GoldenPath hg38 (UCSC)TXNDC15  -     chr5:134873770-134901633 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXNDC15  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblTXNDC15 - 5q31.1 [CytoView hg19]  TXNDC15 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBITXNDC15 [Mapview hg19]  TXNDC15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026278 AK056512 AK092425 AK225454 AK225462
RefSeq transcript (Entrez)NM_001350735 NM_024715
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TXNDC15
Cluster EST : UnigeneHs.741304 [ NCBI ]
CGAP (NCI)Hs.741304
Alternative Splicing GalleryENSG00000113621
Gene ExpressionTXNDC15 [ NCBI-GEO ]   TXNDC15 [ EBI - ARRAY_EXPRESS ]   TXNDC15 [ SEEK ]   TXNDC15 [ MEM ]
Gene Expression Viewer (FireBrowse)TXNDC15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79770
GTEX Portal (Tissue expression)TXNDC15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96J42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96J42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96J42
Splice isoforms : SwissVarQ96J42
PhosPhoSitePlusQ96J42
Domaine pattern : Prosite (Expaxy)THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)Thioredoxin-like_fold    Thioredoxin_domain   
Domain families : Pfam (Sanger)Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam00085   
Conserved Domain (NCBI)TXNDC15
DMDM Disease mutations79770
Blocks (Seattle)TXNDC15
SuperfamilyQ96J42
Human Protein AtlasENSG00000113621
Peptide AtlasQ96J42
HPRD08658
IPIIPI00151990   IPI00854766   IPI00965076   IPI00963855   IPI00964633   IPI00964919   IPI00965838   IPI00965520   
Protein Interaction databases
DIP (DOE-UCLA)Q96J42
IntAct (EBI)Q96J42
FunCoupENSG00000113621
BioGRIDTXNDC15
STRING (EMBL)TXNDC15
ZODIACTXNDC15
Ontologies - Pathways
QuickGOQ96J42
Ontology : AmiGOintegral component of membrane  cell redox homeostasis  
Ontology : EGO-EBIintegral component of membrane  cell redox homeostasis  
NDEx NetworkTXNDC15
Atlas of Cancer Signalling NetworkTXNDC15
Wikipedia pathwaysTXNDC15
Orthology - Evolution
OrthoDB79770
GeneTree (enSembl)ENSG00000113621
Phylogenetic Trees/Animal Genes : TreeFamTXNDC15
HOVERGENQ96J42
HOGENOMQ96J42
Homologs : HomoloGeneTXNDC15
Homology/Alignments : Family Browser (UCSC)TXNDC15
Gene fusions - Rearrangements
Fusion : MitelmanTXNDC15/ARPC2 [5q31.1/2q35]  
Fusion: TCGATXNDC15 5q31.1 ARPC2 2q35 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXNDC15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXNDC15
dbVarTXNDC15
ClinVarTXNDC15
1000_GenomesTXNDC15 
Exome Variant ServerTXNDC15
ExAC (Exome Aggregation Consortium)TXNDC15 (select the gene name)
Genetic variants : HAPMAP79770
Genomic Variants (DGV)TXNDC15 [DGVbeta]
DECIPHERTXNDC15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXNDC15 
Mutations
ICGC Data PortalTXNDC15 
TCGA Data PortalTXNDC15 
Broad Tumor PortalTXNDC15
OASIS PortalTXNDC15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXNDC15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTXNDC15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TXNDC15
DgiDB (Drug Gene Interaction Database)TXNDC15
DoCM (Curated mutations)TXNDC15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TXNDC15 (select a term)
intoGenTXNDC15
Cancer3DTXNDC15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTXNDC15
Genetic Testing Registry TXNDC15
NextProtQ96J42 [Medical]
TSGene79770
GENETestsTXNDC15
Target ValidationTXNDC15
Huge Navigator TXNDC15 [HugePedia]
snp3D : Map Gene to Disease79770
BioCentury BCIQTXNDC15
ClinGenTXNDC15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79770
Chemical/Pharm GKB GenePA162407473
Clinical trialTXNDC15
Miscellaneous
canSAR (ICR)TXNDC15 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTXNDC15
EVEXTXNDC15
GoPubMedTXNDC15
iHOPTXNDC15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:10:51 CEST 2017

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