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TXNDC15 (thioredoxin domain containing 15)

Identity

Alias (NCBI)BUG
C5orf14
UNQ335
HGNC (Hugo) TXNDC15
HGNC Alias symb2310047H23Rik
FLJ22625
HGNC Previous nameC5orf14
HGNC Previous namechromosome 5 open reading frame 14
LocusID (NCBI) 79770
Atlas_Id 54742
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 134874371 and ends at 134901635 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TXNDC15 (5q31.1) / ARPC2 (2q35)TXNDC15 5q31.1 / ARPC2 2q35

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TXNDC15   20652
Cards
Entrez_Gene (NCBI)TXNDC15    thioredoxin domain containing 15
AliasesBUG; C5orf14; UNQ335
GeneCards (Weizmann)TXNDC15
Ensembl hg19 (Hinxton)ENSG00000113621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113621 [Gene_View]  ENSG00000113621 [Sequence]  chr5:134874371-134901635 [Contig_View]  TXNDC15 [Vega]
ICGC DataPortalENSG00000113621
TCGA cBioPortalTXNDC15
AceView (NCBI)TXNDC15
Genatlas (Paris)TXNDC15
SOURCE (Princeton)TXNDC15
Genetics Home Reference (NIH)TXNDC15
Genomic and cartography
GoldenPath hg38 (UCSC)TXNDC15  -     chr5:134874371-134901635 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXNDC15  -     5q31.1   [Description]    (hg19-Feb_2009)
GoldenPathTXNDC15 - 5q31.1 [CytoView hg19]  TXNDC15 - 5q31.1 [CytoView hg38]
ImmunoBaseENSG00000113621
Genome Data Viewer NCBITXNDC15 [Mapview hg19]  
OMIM617778   
Gene and transcription
Genbank (Entrez)AK026278 AK056512 AK092425 AK225454 AK225462
RefSeq transcript (Entrez)NM_001350735 NM_024715
Consensus coding sequences : CCDS (NCBI)TXNDC15
Gene ExpressionTXNDC15 [ NCBI-GEO ]   TXNDC15 [ EBI - ARRAY_EXPRESS ]   TXNDC15 [ SEEK ]   TXNDC15 [ MEM ]
Gene Expression Viewer (FireBrowse)TXNDC15 [ Firebrowse - Broad ]
GenevisibleExpression of TXNDC15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79770
GTEX Portal (Tissue expression)TXNDC15
Human Protein AtlasENSG00000113621-TXNDC15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96J42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96J42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96J42
PhosPhoSitePlusQ96J42
Domaine pattern : Prosite (Expaxy)THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)Thioredoxin-like_sf    Thioredoxin_domain    TXNDC15   
Domain families : Pfam (Sanger)Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam00085   
Conserved Domain (NCBI)TXNDC15
SuperfamilyQ96J42
AlphaFold pdb e-kbQ96J42   
Human Protein Atlas [tissue]ENSG00000113621-TXNDC15 [tissue]
HPRD08658
Protein Interaction databases
DIP (DOE-UCLA)Q96J42
IntAct (EBI)Q96J42
BioGRIDTXNDC15
STRING (EMBL)TXNDC15
ZODIACTXNDC15
Ontologies - Pathways
QuickGOQ96J42
Ontology : AmiGOprotein binding  cilium  cilium  integral component of membrane  positive regulation of smoothened signaling pathway  ciliary membrane  cilium assembly  cilium assembly  
Ontology : EGO-EBIprotein binding  cilium  cilium  integral component of membrane  positive regulation of smoothened signaling pathway  ciliary membrane  cilium assembly  cilium assembly  
NDEx NetworkTXNDC15
Atlas of Cancer Signalling NetworkTXNDC15
Wikipedia pathwaysTXNDC15
Orthology - Evolution
OrthoDB79770
GeneTree (enSembl)ENSG00000113621
Phylogenetic Trees/Animal Genes : TreeFamTXNDC15
Homologs : HomoloGeneTXNDC15
Homology/Alignments : Family Browser (UCSC)TXNDC15
Gene fusions - Rearrangements
Fusion : MitelmanTXNDC15/ARPC2 [5q31.1/2q35]  
Fusion : QuiverTXNDC15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXNDC15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXNDC15
dbVarTXNDC15
ClinVarTXNDC15
MonarchTXNDC15
1000_GenomesTXNDC15 
Exome Variant ServerTXNDC15
GNOMAD BrowserENSG00000113621
Varsome BrowserTXNDC15
ACMGTXNDC15 variants
VarityQ96J42
Genomic Variants (DGV)TXNDC15 [DGVbeta]
DECIPHERTXNDC15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXNDC15 
Mutations
ICGC Data PortalTXNDC15 
TCGA Data PortalTXNDC15 
Broad Tumor PortalTXNDC15
OASIS PortalTXNDC15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXNDC15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTXNDC15
Mutations and Diseases : HGMDTXNDC15
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTXNDC15
DgiDB (Drug Gene Interaction Database)TXNDC15
DoCM (Curated mutations)TXNDC15
CIViC (Clinical Interpretations of Variants in Cancer)TXNDC15
Cancer3DTXNDC15
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617778   
Orphanet
DisGeNETTXNDC15
MedgenTXNDC15
Genetic Testing Registry TXNDC15
NextProtQ96J42 [Medical]
GENETestsTXNDC15
Target ValidationTXNDC15
Huge Navigator TXNDC15 [HugePedia]
ClinGenTXNDC15
Clinical trials, drugs, therapy
MyCancerGenomeTXNDC15
Protein Interactions : CTDTXNDC15
Pharm GKB GenePA162407473
PharosQ96J42
Clinical trialTXNDC15
Miscellaneous
canSAR (ICR)TXNDC15
HarmonizomeTXNDC15
DataMed IndexTXNDC15
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTXNDC15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:56 CEST 2021

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