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TXNDC17 (thioredoxin domain containing 17)

Identity

Alias (NCBI)TRP14
TXNL5
HGNC (Hugo) TXNDC17
HGNC Alias symbMGC14353
TRP14
HGNC Alias namethioredoxin (Trx)-related protein, 14 kDa
HGNC Previous nameTXNL5
HGNC Previous namethioredoxin-like 5
LocusID (NCBI) 84817
Atlas_Id 45804
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6641060 and ends at 6644541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
METTL16 (17p13.3) / TXNDC17 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TXNDC17   28218
Cards
Entrez_Gene (NCBI)TXNDC17    thioredoxin domain containing 17
AliasesTRP14; TXNL5
GeneCards (Weizmann)TXNDC17
Ensembl hg19 (Hinxton)ENSG00000129235 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129235 [Gene_View]  ENSG00000129235 [Sequence]  chr17:6641060-6644541 [Contig_View]  TXNDC17 [Vega]
ICGC DataPortalENSG00000129235
TCGA cBioPortalTXNDC17
AceView (NCBI)TXNDC17
Genatlas (Paris)TXNDC17
SOURCE (Princeton)TXNDC17
Genetics Home Reference (NIH)TXNDC17
Genomic and cartography
GoldenPath hg38 (UCSC)TXNDC17  -     chr17:6641060-6644541 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXNDC17  -     17p13.1   [Description]    (hg19-Feb_2009)
GoldenPathTXNDC17 - 17p13.1 [CytoView hg19]  TXNDC17 - 17p13.1 [CytoView hg38]
ImmunoBaseENSG00000129235
Genome Data Viewer NCBITXNDC17 [Mapview hg19]  
OMIM616967   
Gene and transcription
Genbank (Entrez)AF086210 AJ344101 AK291963 AK311853 BC006405
RefSeq transcript (Entrez)NM_032731
Consensus coding sequences : CCDS (NCBI)TXNDC17
Gene ExpressionTXNDC17 [ NCBI-GEO ]   TXNDC17 [ EBI - ARRAY_EXPRESS ]   TXNDC17 [ SEEK ]   TXNDC17 [ MEM ]
Gene Expression Viewer (FireBrowse)TXNDC17 [ Firebrowse - Broad ]
GenevisibleExpression of TXNDC17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84817
GTEX Portal (Tissue expression)TXNDC17
Human Protein AtlasENSG00000129235-TXNDC17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRA2
PhosPhoSitePlusQ9BRA2
Domains : Interpro (EBI)DUF953_thioredox    Thioredoxin-like_sf   
Domain families : Pfam (Sanger)DUF953 (PF06110)   
Domain families : Pfam (NCBI)pfam06110   
Conserved Domain (NCBI)TXNDC17
PDB (RSDB)1WOU   
PDB Europe1WOU   
PDB (PDBSum)1WOU   
PDB (IMB)1WOU   
Structural Biology KnowledgeBase1WOU   
SCOP (Structural Classification of Proteins)1WOU   
CATH (Classification of proteins structures)1WOU   
SuperfamilyQ9BRA2
AlphaFold pdb e-kbQ9BRA2   
Human Protein Atlas [tissue]ENSG00000129235-TXNDC17 [tissue]
HPRD11656
Protein Interaction databases
DIP (DOE-UCLA)Q9BRA2
IntAct (EBI)Q9BRA2
BioGRIDTXNDC17
STRING (EMBL)TXNDC17
ZODIACTXNDC17
Ontologies - Pathways
QuickGOQ9BRA2
Ontology : AmiGOperoxidase activity  protein binding  cytosol  cytosol  tumor necrosis factor-mediated signaling pathway  protein-disulfide reductase (NAD(P)) activity  protein-disulfide reductase (NAD(P)) activity  extracellular exosome  cellular oxidant detoxification  
Ontology : EGO-EBIperoxidase activity  protein binding  cytosol  cytosol  tumor necrosis factor-mediated signaling pathway  protein-disulfide reductase (NAD(P)) activity  protein-disulfide reductase (NAD(P)) activity  extracellular exosome  cellular oxidant detoxification  
NDEx NetworkTXNDC17
Atlas of Cancer Signalling NetworkTXNDC17
Wikipedia pathwaysTXNDC17
Orthology - Evolution
OrthoDB84817
GeneTree (enSembl)ENSG00000129235
Phylogenetic Trees/Animal Genes : TreeFamTXNDC17
Homologs : HomoloGeneTXNDC17
Homology/Alignments : Family Browser (UCSC)TXNDC17
Gene fusions - Rearrangements
Fusion : QuiverTXNDC17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXNDC17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXNDC17
dbVarTXNDC17
ClinVarTXNDC17
MonarchTXNDC17
1000_GenomesTXNDC17 
Exome Variant ServerTXNDC17
GNOMAD BrowserENSG00000129235
Varsome BrowserTXNDC17
ACMGTXNDC17 variants
VarityQ9BRA2
Genomic Variants (DGV)TXNDC17 [DGVbeta]
DECIPHERTXNDC17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXNDC17 
Mutations
ICGC Data PortalTXNDC17 
TCGA Data PortalTXNDC17 
Broad Tumor PortalTXNDC17
OASIS PortalTXNDC17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXNDC17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTXNDC17
Mutations and Diseases : HGMDTXNDC17
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTXNDC17
DgiDB (Drug Gene Interaction Database)TXNDC17
DoCM (Curated mutations)TXNDC17
CIViC (Clinical Interpretations of Variants in Cancer)TXNDC17
Cancer3DTXNDC17
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616967   
Orphanet
DisGeNETTXNDC17
MedgenTXNDC17
Genetic Testing Registry TXNDC17
NextProtQ9BRA2 [Medical]
GENETestsTXNDC17
Target ValidationTXNDC17
Huge Navigator TXNDC17 [HugePedia]
ClinGenTXNDC17
Clinical trials, drugs, therapy
MyCancerGenomeTXNDC17
Protein Interactions : CTDTXNDC17
Pharm GKB GenePA162407489
PharosQ9BRA2
Clinical trialTXNDC17
Miscellaneous
canSAR (ICR)TXNDC17
HarmonizomeTXNDC17
DataMed IndexTXNDC17
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTXNDC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:57 CEST 2021

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