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TXNDC17 (thioredoxin domain containing 17)

Identity

Alias_names14 kDa
TXNL5
Alias_symbol (synonym)MGC14353
TRP14
Other alias
HGNC (Hugo) TXNDC17
LocusID (NCBI) 84817
Atlas_Id 45804
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6640902 and ends at 6644541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
METTL16 (17p13.3) / TXNDC17 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TXNDC17   28218
Cards
Entrez_Gene (NCBI)TXNDC17  84817  thioredoxin domain containing 17
AliasesTRP14; TXNL5
GeneCards (Weizmann)TXNDC17
Ensembl hg19 (Hinxton)ENSG00000129235 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129235 [Gene_View]  chr17:6640902-6644541 [Contig_View]  TXNDC17 [Vega]
ICGC DataPortalENSG00000129235
TCGA cBioPortalTXNDC17
AceView (NCBI)TXNDC17
Genatlas (Paris)TXNDC17
WikiGenes84817
SOURCE (Princeton)TXNDC17
Genetics Home Reference (NIH)TXNDC17
Genomic and cartography
GoldenPath hg38 (UCSC)TXNDC17  -     chr17:6640902-6644541 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXNDC17  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblTXNDC17 - 17p13.1 [CytoView hg19]  TXNDC17 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBITXNDC17 [Mapview hg19]  TXNDC17 [Mapview hg38]
OMIM616967   
Gene and transcription
Genbank (Entrez)AF086210 AJ344101 AK291963 AK311853 BC006405
RefSeq transcript (Entrez)NM_032731
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TXNDC17
Cluster EST : UnigeneHs.408236 [ NCBI ]
CGAP (NCI)Hs.408236
Alternative Splicing GalleryENSG00000129235
Gene ExpressionTXNDC17 [ NCBI-GEO ]   TXNDC17 [ EBI - ARRAY_EXPRESS ]   TXNDC17 [ SEEK ]   TXNDC17 [ MEM ]
Gene Expression Viewer (FireBrowse)TXNDC17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84817
GTEX Portal (Tissue expression)TXNDC17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRA2
Splice isoforms : SwissVarQ9BRA2
PhosPhoSitePlusQ9BRA2
Domains : Interpro (EBI)DUF953_thioredox    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)DUF953 (PF06110)   
Domain families : Pfam (NCBI)pfam06110   
Conserved Domain (NCBI)TXNDC17
DMDM Disease mutations84817
Blocks (Seattle)TXNDC17
PDB (SRS)1WOU   
PDB (PDBSum)1WOU   
PDB (IMB)1WOU   
PDB (RSDB)1WOU   
Structural Biology KnowledgeBase1WOU   
SCOP (Structural Classification of Proteins)1WOU   
CATH (Classification of proteins structures)1WOU   
SuperfamilyQ9BRA2
Human Protein AtlasENSG00000129235
Peptide AtlasQ9BRA2
HPRD11656
IPIIPI00646689   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRA2
IntAct (EBI)Q9BRA2
FunCoupENSG00000129235
BioGRIDTXNDC17
STRING (EMBL)TXNDC17
ZODIACTXNDC17
Ontologies - Pathways
QuickGOQ9BRA2
Ontology : AmiGOperoxidase activity  protein binding  cytosol  tumor necrosis factor-mediated signaling pathway  protein-disulfide reductase activity  oxidation-reduction process  extracellular exosome  cellular oxidant detoxification  
Ontology : EGO-EBIperoxidase activity  protein binding  cytosol  tumor necrosis factor-mediated signaling pathway  protein-disulfide reductase activity  oxidation-reduction process  extracellular exosome  cellular oxidant detoxification  
NDEx NetworkTXNDC17
Atlas of Cancer Signalling NetworkTXNDC17
Wikipedia pathwaysTXNDC17
Orthology - Evolution
OrthoDB84817
GeneTree (enSembl)ENSG00000129235
Phylogenetic Trees/Animal Genes : TreeFamTXNDC17
HOVERGENQ9BRA2
HOGENOMQ9BRA2
Homologs : HomoloGeneTXNDC17
Homology/Alignments : Family Browser (UCSC)TXNDC17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXNDC17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXNDC17
dbVarTXNDC17
ClinVarTXNDC17
1000_GenomesTXNDC17 
Exome Variant ServerTXNDC17
ExAC (Exome Aggregation Consortium)TXNDC17 (select the gene name)
Genetic variants : HAPMAP84817
Genomic Variants (DGV)TXNDC17 [DGVbeta]
DECIPHERTXNDC17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXNDC17 
Mutations
ICGC Data PortalTXNDC17 
TCGA Data PortalTXNDC17 
Broad Tumor PortalTXNDC17
OASIS PortalTXNDC17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXNDC17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTXNDC17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TXNDC17
DgiDB (Drug Gene Interaction Database)TXNDC17
DoCM (Curated mutations)TXNDC17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TXNDC17 (select a term)
intoGenTXNDC17
Cancer3DTXNDC17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616967   
Orphanet
MedgenTXNDC17
Genetic Testing Registry TXNDC17
NextProtQ9BRA2 [Medical]
TSGene84817
GENETestsTXNDC17
Target ValidationTXNDC17
Huge Navigator TXNDC17 [HugePedia]
snp3D : Map Gene to Disease84817
BioCentury BCIQTXNDC17
ClinGenTXNDC17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84817
Chemical/Pharm GKB GenePA162407489
Clinical trialTXNDC17
Miscellaneous
canSAR (ICR)TXNDC17 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTXNDC17
EVEXTXNDC17
GoPubMedTXNDC17
iHOPTXNDC17
Genes if tithe/b>automatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:36:55 CEST 2017

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