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TXNDC9 (thioredoxin domain containing 9)

Identity

Alias_symbol (synonym)APACD
Other aliasPHLP3
HGNC (Hugo) TXNDC9
LocusID (NCBI) 10190
Atlas_Id 53243
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 99319024 and ends at 99336397 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EIF5B (2q11.2) / TXNDC9 (2q11.2)TXNDC9 (2q11.2) / MLEC (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TXNDC9   24110
Cards
Entrez_Gene (NCBI)TXNDC9  10190  thioredoxin domain containing 9
AliasesAPACD; PHLP3
GeneCards (Weizmann)TXNDC9
Ensembl hg19 (Hinxton)ENSG00000115514 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115514 [Gene_View]  chr2:99319024-99336397 [Contig_View]  TXNDC9 [Vega]
ICGC DataPortalENSG00000115514
TCGA cBioPortalTXNDC9
AceView (NCBI)TXNDC9
Genatlas (Paris)TXNDC9
WikiGenes10190
SOURCE (Princeton)TXNDC9
Genetics Home Reference (NIH)TXNDC9
Genomic and cartography
GoldenPath hg38 (UCSC)TXNDC9  -     chr2:99319024-99336397 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXNDC9  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblTXNDC9 - 2q11.2 [CytoView hg19]  TXNDC9 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBITXNDC9 [Mapview hg19]  TXNDC9 [Mapview hg38]
OMIM612564   
Gene and transcription
Genbank (Entrez)AB006679 AB451403 AK222616 AK301722 AK313777
RefSeq transcript (Entrez)NM_005783
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TXNDC9
Cluster EST : UnigeneHs.536122 [ NCBI ]
CGAP (NCI)Hs.536122
Alternative Splicing GalleryENSG00000115514
Gene ExpressionTXNDC9 [ NCBI-GEO ]   TXNDC9 [ EBI - ARRAY_EXPRESS ]   TXNDC9 [ SEEK ]   TXNDC9 [ MEM ]
Gene Expression Viewer (FireBrowse)TXNDC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10190
GTEX Portal (Tissue expression)TXNDC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14530   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14530  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14530
Splice isoforms : SwissVarO14530
PhosPhoSitePlusO14530
Domains : Interpro (EBI)Thioredoxin-like_fold    Thioredoxin_domain   
Domain families : Pfam (Sanger)Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam00085   
Conserved Domain (NCBI)TXNDC9
DMDM Disease mutations10190
Blocks (Seattle)TXNDC9
SuperfamilyO14530
Human Protein AtlasENSG00000115514
Peptide AtlasO14530
HPRD15592
IPIIPI00022386   IPI00917664   IPI00917790   IPI00917937   IPI00916969   IPI00915910   
Protein Interaction databases
DIP (DOE-UCLA)O14530
IntAct (EBI)O14530
FunCoupENSG00000115514
BioGRIDTXNDC9
STRING (EMBL)TXNDC9
ZODIACTXNDC9
Ontologies - Pathways
QuickGOO14530
Ontology : AmiGOprotein binding  cellular_component  nucleus  cytoplasm  centrosome  biological_process  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  midbody  cadherin binding  cell redox homeostasis  
Ontology : EGO-EBIprotein binding  cellular_component  nucleus  cytoplasm  centrosome  biological_process  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  midbody  cadherin binding  cell redox homeostasis  
NDEx NetworkTXNDC9
Atlas of Cancer Signalling NetworkTXNDC9
Wikipedia pathwaysTXNDC9
Orthology - Evolution
OrthoDB10190
GeneTree (enSembl)ENSG00000115514
Phylogenetic Trees/Animal Genes : TreeFamTXNDC9
HOVERGENO14530
HOGENOMO14530
Homologs : HomoloGeneTXNDC9
Homology/Alignments : Family Browser (UCSC)TXNDC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXNDC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXNDC9
dbVarTXNDC9
ClinVarTXNDC9
1000_GenomesTXNDC9 
Exome Variant ServerTXNDC9
ExAC (Exome Aggregation Consortium)TXNDC9 (select the gene name)
Genetic variants : HAPMAP10190
Genomic Variants (DGV)TXNDC9 [DGVbeta]
DECIPHERTXNDC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXNDC9 
Mutations
ICGC Data PortalTXNDC9 
TCGA Data PortalTXNDC9 
Broad Tumor PortalTXNDC9
OASIS PortalTXNDC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXNDC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTXNDC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TXNDC9
DgiDB (Drug Gene Interaction Database)TXNDC9
DoCM (Curated mutations)TXNDC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TXNDC9 (select a term)
intoGenTXNDC9
Cancer3DTXNDC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612564   
Orphanet
MedgenTXNDC9
Genetic Testing Registry TXNDC9
NextProtO14530 [Medical]
TSGene10190
GENETestsTXNDC9
Huge Navigator TXNDC9 [HugePedia]
snp3D : Map Gene to Disease10190
BioCentury BCIQTXNDC9
ClinGenTXNDC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10190
Chemical/Pharm GKB GenePA134957934
Clinical trialTXNDC9
Miscellaneous
canSAR (ICR)TXNDC9 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTXNDC9
EVEXTXNDC9
GoPubMedTXNDC9
iHOPTXNDC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:42:52 CEST 2017

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