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TXNL1 (thioredoxin like 1)

Identity

Alias (NCBI)HEL-S-114
TRP32
TXL-1
TXNL
Txl
HGNC (Hugo) TXNL1
HGNC Alias symbTxl
TRP32
HGNC Alias namethioredoxin-like, 32kD
HGNC Previous nameTXNL
HGNC Previous namethioredoxin-like, 32kDa
 thioredoxin-like 1
LocusID (NCBI) 9352
Atlas_Id 52491
Location 18q21.31  [Link to chromosome band 18q21]
Location_base_pair Starts at 56597209 and ends at 56638592 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NEAT1 (11q13.1) / TXNL1 (18q21.31)OAZ1 (19p13.3) / TXNL1 (18q21.31)TXNL1 (18q21.31) / LRP1B (2q22.1)
TXNL1 18q21.31 / LRP1B 2q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TXNL1   12436
Cards
Entrez_Gene (NCBI)TXNL1    thioredoxin like 1
AliasesHEL-S-114; TRP32; TXL-1; TXNL; 
Txl
GeneCards (Weizmann)TXNL1
Ensembl hg19 (Hinxton)ENSG00000091164 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000091164 [Gene_View]  ENSG00000091164 [Sequence]  chr18:56597209-56638592 [Contig_View]  TXNL1 [Vega]
ICGC DataPortalENSG00000091164
TCGA cBioPortalTXNL1
AceView (NCBI)TXNL1
Genatlas (Paris)TXNL1
SOURCE (Princeton)TXNL1
Genetics Home Reference (NIH)TXNL1
Genomic and cartography
GoldenPath hg38 (UCSC)TXNL1  -     chr18:56597209-56638592 -  18q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TXNL1  -     18q21.31   [Description]    (hg19-Feb_2009)
GoldenPathTXNL1 - 18q21.31 [CytoView hg19]  TXNL1 - 18q21.31 [CytoView hg38]
ImmunoBaseENSG00000091164
Genome Data Viewer NCBITXNL1 [Mapview hg19]  
OMIM603049   
Gene and transcription
Genbank (Entrez)AB209263 AF003938 AF051896 AF052659 AK094926
RefSeq transcript (Entrez)NM_004786
Consensus coding sequences : CCDS (NCBI)TXNL1
Gene ExpressionTXNL1 [ NCBI-GEO ]   TXNL1 [ EBI - ARRAY_EXPRESS ]   TXNL1 [ SEEK ]   TXNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)TXNL1 [ Firebrowse - Broad ]
GenevisibleExpression of TXNL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9352
GTEX Portal (Tissue expression)TXNL1
Human Protein AtlasENSG00000091164-TXNL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43396   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43396  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43396
PhosPhoSitePlusO43396
Domaine pattern : Prosite (Expaxy)PITH (PS51532)    THIOREDOXIN_1 (PS00194)   
Domains : Interpro (EBI)Galactose-bd-like_sf    PITH_dom    PITH_dom_sf    Thioredoxin-like_sf    Thioredoxin_CS    Thioredoxin_domain   
Domain families : Pfam (Sanger)PITH (PF06201)    Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam06201    pfam00085   
Conserved Domain (NCBI)TXNL1
PDB (RSDB)1GH2    1WWY   
PDB Europe1GH2    1WWY   
PDB (PDBSum)1GH2    1WWY   
PDB (IMB)1GH2    1WWY   
Structural Biology KnowledgeBase1GH2    1WWY   
SCOP (Structural Classification of Proteins)1GH2    1WWY   
CATH (Classification of proteins structures)1GH2    1WWY   
SuperfamilyO43396
AlphaFold pdb e-kbO43396   
Human Protein Atlas [tissue]ENSG00000091164-TXNL1 [tissue]
HPRD04335
Protein Interaction databases
DIP (DOE-UCLA)O43396
IntAct (EBI)O43396
BioGRIDTXNL1
STRING (EMBL)TXNL1
ZODIACTXNL1
Ontologies - Pathways
QuickGOO43396
Ontology : AmiGOproteasome complex  nucleus  cytoplasm  cytosol  disulfide oxidoreductase activity  
Ontology : EGO-EBIproteasome complex  nucleus  cytoplasm  cytosol  disulfide oxidoreductase activity  
NDEx NetworkTXNL1
Atlas of Cancer Signalling NetworkTXNL1
Wikipedia pathwaysTXNL1
Orthology - Evolution
OrthoDB9352
GeneTree (enSembl)ENSG00000091164
Phylogenetic Trees/Animal Genes : TreeFamTXNL1
Homologs : HomoloGeneTXNL1
Homology/Alignments : Family Browser (UCSC)TXNL1
Gene fusions - Rearrangements
Fusion : MitelmanTXNL1/LRP1B [18q21.31/2q22.1]  
Fusion : QuiverTXNL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXNL1
dbVarTXNL1
ClinVarTXNL1
MonarchTXNL1
1000_GenomesTXNL1 
Exome Variant ServerTXNL1
GNOMAD BrowserENSG00000091164
Varsome BrowserTXNL1
ACMGTXNL1 variants
VarityO43396
Genomic Variants (DGV)TXNL1 [DGVbeta]
DECIPHERTXNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTXNL1 
Mutations
ICGC Data PortalTXNL1 
TCGA Data PortalTXNL1 
Broad Tumor PortalTXNL1
OASIS PortalTXNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTXNL1
Mutations and Diseases : HGMDTXNL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTXNL1
DgiDB (Drug Gene Interaction Database)TXNL1
DoCM (Curated mutations)TXNL1
CIViC (Clinical Interpretations of Variants in Cancer)TXNL1
Cancer3DTXNL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603049   
Orphanet
DisGeNETTXNL1
MedgenTXNL1
Genetic Testing Registry TXNL1
NextProtO43396 [Medical]
GENETestsTXNL1
Target ValidationTXNL1
Huge Navigator TXNL1 [HugePedia]
ClinGenTXNL1
Clinical trials, drugs, therapy
MyCancerGenomeTXNL1
Protein Interactions : CTDTXNL1
Pharm GKB GenePA134967488
PharosO43396
Clinical trialTXNL1
Miscellaneous
canSAR (ICR)TXNL1
HarmonizomeTXNL1
DataMed IndexTXNL1
Probes
Litterature
PubMed74 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTXNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:58 CEST 2021

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