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TXNRD3NB (thioredoxin reductase 3 neighbor)

Identity

Alias_namesTXNRD3IT1
thioredoxin reductase 3 intronic transcript 1
Alias_symbol (synonym)TR2IT1
TXNRD3NT1
Other alias
HGNC (Hugo) TXNRD3NB
LocusID (NCBI) 645840
Atlas_Id 75392
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 126290622 and ends at 126327398 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TXNRD3NB   33870
Cards
Entrez_Gene (NCBI)TXNRD3NB  645840  thioredoxin reductase 3 neighbor
AliasesTR2IT1; TXNRD3IT1; TXNRD3NT1
GeneCards (Weizmann)TXNRD3NB
Ensembl hg19 (Hinxton)ENSG00000197763 [Gene_View]  chr3:126290622-126327398 [Contig_View]  TXNRD3NB [Vega]
Ensembl hg38 (Hinxton)ENSG00000197763 [Gene_View]  chr3:126290622-126327398 [Contig_View]  TXNRD3NB [Vega]
ICGC DataPortalENSG00000197763
TCGA cBioPortalTXNRD3NB
AceView (NCBI)TXNRD3NB
Genatlas (Paris)TXNRD3NB
WikiGenes645840
SOURCE (Princeton)TXNRD3NB
Genetics Home Reference (NIH)TXNRD3NB
Genomic and cartography
GoldenPath hg19 (UCSC)TXNRD3NB  -     chr3:126290622-126327398 -  3q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TXNRD3NB  -     3q21.3   [Description]    (hg38-Dec_2013)
EnsemblTXNRD3NB - 3q21.3 [CytoView hg19]  TXNRD3NB - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBITXNRD3NB [Mapview hg19]  TXNRD3NB [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB113648 BC130546 BC130548 HQ258068
RefSeq transcript (Entrez)NM_001039783
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)TXNRD3NB
Cluster EST : UnigeneHs.477475 [ NCBI ]
CGAP (NCI)Hs.477475
Alternative Splicing GalleryENSG00000197763
Gene ExpressionTXNRD3NB [ NCBI-GEO ]   TXNRD3NB [ EBI - ARRAY_EXPRESS ]   TXNRD3NB [ SEEK ]   TXNRD3NB [ MEM ]
Gene Expression Viewer (FireBrowse)TXNRD3NB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645840
GTEX Portal (Tissue expression)TXNRD3NB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6F5E7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6F5E7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6F5E7
Splice isoforms : SwissVarQ6F5E7
PhosPhoSitePlusQ6F5E7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TXNRD3NB
DMDM Disease mutations645840
Blocks (Seattle)TXNRD3NB
SuperfamilyQ6F5E7
Human Protein AtlasENSG00000197763
Peptide AtlasQ6F5E7
IPIIPI00456627   
Protein Interaction databases
DIP (DOE-UCLA)Q6F5E7
IntAct (EBI)Q6F5E7
FunCoupENSG00000197763
BioGRIDTXNRD3NB
STRING (EMBL)TXNRD3NB
ZODIACTXNRD3NB
Ontologies - Pathways
QuickGOQ6F5E7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTXNRD3NB
Atlas of Cancer Signalling NetworkTXNRD3NB
Wikipedia pathwaysTXNRD3NB
Orthology - Evolution
OrthoDB645840
GeneTree (enSembl)ENSG00000197763
Phylogenetic Trees/Animal Genes : TreeFamTXNRD3NB
HOVERGENQ6F5E7
HOGENOMQ6F5E7
Homologs : HomoloGeneTXNRD3NB
Homology/Alignments : Family Browser (UCSC)TXNRD3NB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTXNRD3NB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TXNRD3NB
dbVarTXNRD3NB
ClinVarTXNRD3NB
1000_GenomesTXNRD3NB 
Exome Variant ServerTXNRD3NB
ExAC (Exome Aggregation Consortium)TXNRD3NB (select the gene name)
Genetic variants : HAPMAP645840
Genomic Variants (DGV)TXNRD3NB [DGVbeta]
DECIPHER (Syndromes)3:126290622-126327398  ENSG00000197763
CONAN: Copy Number AnalysisTXNRD3NB 
Mutations
ICGC Data PortalTXNRD3NB 
TCGA Data PortalTXNRD3NB 
Broad Tumor PortalTXNRD3NB
OASIS PortalTXNRD3NB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTXNRD3NB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTXNRD3NB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TXNRD3NB
DgiDB (Drug Gene Interaction Database)TXNRD3NB
DoCM (Curated mutations)TXNRD3NB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TXNRD3NB (select a term)
intoGenTXNRD3NB
Cancer3DTXNRD3NB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTXNRD3NB
Genetic Testing Registry TXNRD3NB
NextProtQ6F5E7 [Medical]
TSGene645840
GENETestsTXNRD3NB
Huge Navigator TXNRD3NB [HugePedia]
snp3D : Map Gene to Disease645840
BioCentury BCIQTXNRD3NB
ClinGenTXNRD3NB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645840
Chemical/Pharm GKB GenePA165698675
Clinical trialTXNRD3NB
Miscellaneous
canSAR (ICR)TXNRD3NB (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTXNRD3NB
EVEXTXNRD3NB
GoPubMedTXNRD3NB
iHOPTXNRD3NB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:31 CET 2017

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