Atlas of Genetics and Cytogenetics in Oncology and Haematology


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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TYMSOS (TYMS opposite strand)

Identity

Alias_namesC18orf56
chromosome 18 open reading frame 56
Other alias
HGNC (Hugo) TYMSOS
LocusID (NCBI) 494514
Atlas_Id 75393
Location 18p11.32  [Link to chromosome band 18p11]
Location_base_pair Starts at 649620 and ends at 658340 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TYMSOS   29553
Cards
Entrez_Gene (NCBI)TYMSOS  494514  TYMS opposite strand
AliasesC18orf56
GeneCards (Weizmann)TYMSOS
Ensembl hg19 (Hinxton) [Gene_View]  chr18:649620-658340 [Contig_View]  TYMSOS [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:649620-658340 [Contig_View]  TYMSOS [Vega]
TCGA cBioPortalTYMSOS
AceView (NCBI)TYMSOS
Genatlas (Paris)TYMSOS
WikiGenes494514
SOURCE (Princeton)TYMSOS
Genetics Home Reference (NIH)TYMSOS
Genomic and cartography
GoldenPath hg19 (UCSC)TYMSOS  -     chr18:649620-658340 -  18p11.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TYMSOS  -     18p11.32   [Description]    (hg38-Dec_2013)
EnsemblTYMSOS - 18p11.32 [CytoView hg19]  TYMSOS - 18p11.32 [CytoView hg38]
Mapping of homologs : NCBITYMSOS [Mapview hg19]  TYMSOS [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK289986 BC028301 BM695182 JF432502
RefSeq transcript (Entrez)NM_001012716
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)TYMSOS
Cluster EST : UnigeneHs.274959 [ NCBI ]
CGAP (NCI)Hs.274959
Gene ExpressionTYMSOS [ NCBI-GEO ]   TYMSOS [ EBI - ARRAY_EXPRESS ]   TYMSOS [ SEEK ]   TYMSOS [ MEM ]
Gene Expression Viewer (FireBrowse)TYMSOS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494514
GTEX Portal (Tissue expression)TYMSOS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAI1
Splice isoforms : SwissVarQ8TAI1
PhosPhoSitePlusQ8TAI1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TYMSOS
DMDM Disease mutations494514
Blocks (Seattle)TYMSOS
SuperfamilyQ8TAI1
Peptide AtlasQ8TAI1
HPRD18668
IPIIPI00152058   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAI1
IntAct (EBI)Q8TAI1
BioGRIDTYMSOS
STRING (EMBL)TYMSOS
ZODIACTYMSOS
Ontologies - Pathways
QuickGOQ8TAI1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTYMSOS
Atlas of Cancer Signalling NetworkTYMSOS
Wikipedia pathwaysTYMSOS
Orthology - Evolution
OrthoDB494514
Phylogenetic Trees/Animal Genes : TreeFamTYMSOS
HOVERGENQ8TAI1
HOGENOMQ8TAI1
Homologs : HomoloGeneTYMSOS
Homology/Alignments : Family Browser (UCSC)TYMSOS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTYMSOS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TYMSOS
dbVarTYMSOS
ClinVarTYMSOS
1000_GenomesTYMSOS 
Exome Variant ServerTYMSOS
ExAC (Exome Aggregation Consortium)TYMSOS (select the gene name)
Genetic variants : HAPMAP494514
Genomic Variants (DGV)TYMSOS [DGVbeta]
DECIPHER (Syndromes)18:649620-658340  
CONAN: Copy Number AnalysisTYMSOS 
Mutations
ICGC Data PortalTYMSOS 
TCGA Data PortalTYMSOS 
Broad Tumor PortalTYMSOS
OASIS PortalTYMSOS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTYMSOS
BioMutasearch TYMSOS
DgiDB (Drug Gene Interaction Database)TYMSOS
DoCM (Curated mutations)TYMSOS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TYMSOS (select a term)
intoGenTYMSOS
Cancer3DTYMSOS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTYMSOS
Genetic Testing Registry TYMSOS
NextProtQ8TAI1 [Medical]
TSGene494514
GENETestsTYMSOS
Huge Navigator TYMSOS [HugePedia]
snp3D : Map Gene to Disease494514
BioCentury BCIQTYMSOS
ClinGenTYMSOS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD494514
Chemical/Pharm GKB GenePA134956204
Clinical trialTYMSOS
Miscellaneous
canSAR (ICR)TYMSOS (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTYMSOS
EVEXTYMSOS
GoPubMedTYMSOS
iHOPTYMSOS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:50:31 CET 2017

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