Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TYMSOS (TYMS opposite strand RNA)

Identity

Alias (NCBI)C18orf56
HGNC (Hugo) TYMSOS
HGNC Previous nameC18orf56
HGNC Previous namechromosome 18 open reading frame 56
LocusID (NCBI) 494514
Atlas_Id 75393
Location 18p11.32  [Link to chromosome band 18p11]
Location_base_pair Starts at 649620 and ends at 658291 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TYMSOS   29553
Cards
Entrez_Gene (NCBI)TYMSOS    TYMS opposite strand RNA
AliasesC18orf56
GeneCards (Weizmann)TYMSOS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr18:649620-658291 [Contig_View]  TYMSOS [Vega]
TCGA cBioPortalTYMSOS
AceView (NCBI)TYMSOS
Genatlas (Paris)TYMSOS
SOURCE (Princeton)TYMSOS
Genetics Home Reference (NIH)TYMSOS
Genomic and cartography
GoldenPath hg38 (UCSC)TYMSOS  -     chr18:649620-658291 -  18p11.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TYMSOS  -     18p11.32   [Description]    (hg19-Feb_2009)
GoldenPathTYMSOS - 18p11.32 [CytoView hg19]  TYMSOS - 18p11.32 [CytoView hg38]
Genome Data Viewer NCBITYMSOS [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK289986 BC028301 BM695182
RefSeq transcript (Entrez)NM_001012716
Consensus coding sequences : CCDS (NCBI)TYMSOS
Gene ExpressionTYMSOS [ NCBI-GEO ]   TYMSOS [ EBI - ARRAY_EXPRESS ]   TYMSOS [ SEEK ]   TYMSOS [ MEM ]
Gene Expression Viewer (FireBrowse)TYMSOS [ Firebrowse - Broad ]
GenevisibleExpression of TYMSOS in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494514
GTEX Portal (Tissue expression)TYMSOS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAI1
PhosPhoSitePlusQ8TAI1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TYMSOS
SuperfamilyQ8TAI1
AlphaFold pdb e-kbQ8TAI1   
HPRD18668
Protein Interaction databases
DIP (DOE-UCLA)Q8TAI1
IntAct (EBI)Q8TAI1
BioGRIDTYMSOS
STRING (EMBL)TYMSOS
ZODIACTYMSOS
Ontologies - Pathways
QuickGOQ8TAI1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTYMSOS
Atlas of Cancer Signalling NetworkTYMSOS
Wikipedia pathwaysTYMSOS
Orthology - Evolution
OrthoDB494514
Phylogenetic Trees/Animal Genes : TreeFamTYMSOS
Homologs : HomoloGeneTYMSOS
Homology/Alignments : Family Browser (UCSC)TYMSOS
Gene fusions - Rearrangements
Fusion : QuiverTYMSOS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTYMSOS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TYMSOS
dbVarTYMSOS
ClinVarTYMSOS
MonarchTYMSOS
1000_GenomesTYMSOS 
Exome Variant ServerTYMSOS
Varsome BrowserTYMSOS
ACMGTYMSOS variants
VarityQ8TAI1
Genomic Variants (DGV)TYMSOS [DGVbeta]
DECIPHERTYMSOS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTYMSOS 
Mutations
ICGC Data PortalTYMSOS 
TCGA Data PortalTYMSOS 
Broad Tumor PortalTYMSOS
OASIS PortalTYMSOS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTYMSOS
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTYMSOS
DgiDB (Drug Gene Interaction Database)TYMSOS
DoCM (Curated mutations)TYMSOS
CIViC (Clinical Interpretations of Variants in Cancer)TYMSOS
Cancer3DTYMSOS
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTYMSOS
MedgenTYMSOS
Genetic Testing Registry TYMSOS
NextProtQ8TAI1 [Medical]
GENETestsTYMSOS
Target ValidationTYMSOS
Huge Navigator TYMSOS [HugePedia]
ClinGenTYMSOS
Clinical trials, drugs, therapy
MyCancerGenomeTYMSOS
Protein Interactions : CTDTYMSOS
Pharm GKB GenePA134956204
PharosQ8TAI1
Clinical trialTYMSOS
Miscellaneous
canSAR (ICR)TYMSOS
HarmonizomeTYMSOS
DataMed IndexTYMSOS
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTYMSOS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:38 CEST 2021

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