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TYSND1 (trypsin domain containing 1)

Identity

Alias_symbol (synonym)MGC34695
NET41
Other alias
HGNC (Hugo) TYSND1
LocusID (NCBI) 219743
Atlas_Id 75395
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71897737 and ends at 71906496 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TYSND1 (10q22.1) / AIFM2 (10q22.1)TYSND1 (10q22.1) / ANKRD11 (16q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TYSND1   28531
Cards
Entrez_Gene (NCBI)TYSND1  219743  trypsin domain containing 1
AliasesNET41
GeneCards (Weizmann)TYSND1
Ensembl hg19 (Hinxton)ENSG00000156521 [Gene_View]  chr10:71897737-71906496 [Contig_View]  TYSND1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156521 [Gene_View]  chr10:71897737-71906496 [Contig_View]  TYSND1 [Vega]
ICGC DataPortalENSG00000156521
TCGA cBioPortalTYSND1
AceView (NCBI)TYSND1
Genatlas (Paris)TYSND1
WikiGenes219743
SOURCE (Princeton)TYSND1
Genetics Home Reference (NIH)TYSND1
Genomic and cartography
GoldenPath hg19 (UCSC)TYSND1  -     chr10:71897737-71906496 -  10q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TYSND1  -     10q22.1   [Description]    (hg38-Dec_2013)
EnsemblTYSND1 - 10q22.1 [CytoView hg19]  TYSND1 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBITYSND1 [Mapview hg19]  TYSND1 [Mapview hg38]
OMIM611017   
Gene and transcription
Genbank (Entrez)AK074968 AK097697 BC016840 BC030242 BC042629
RefSeq transcript (Entrez)NM_001040273 NM_173555
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)TYSND1
Cluster EST : UnigeneHs.533655 [ NCBI ]
CGAP (NCI)Hs.533655
Alternative Splicing GalleryENSG00000156521
Gene ExpressionTYSND1 [ NCBI-GEO ]   TYSND1 [ EBI - ARRAY_EXPRESS ]   TYSND1 [ SEEK ]   TYSND1 [ MEM ]
Gene Expression Viewer (FireBrowse)TYSND1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219743
GTEX Portal (Tissue expression)TYSND1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2T9J0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2T9J0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2T9J0
Splice isoforms : SwissVarQ2T9J0
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusQ2T9J0
Domains : Interpro (EBI)Pept_S1A_Tysnd1    Peptidase_S1    Trypsin-like_Pept_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)TYSND1
DMDM Disease mutations219743
Blocks (Seattle)TYSND1
SuperfamilyQ2T9J0
Human Protein AtlasENSG00000156521
Peptide AtlasQ2T9J0
HPRD15593
IPIIPI00303214   IPI00384482   
Protein Interaction databases
DIP (DOE-UCLA)Q2T9J0
IntAct (EBI)Q2T9J0
FunCoupENSG00000156521
BioGRIDTYSND1
STRING (EMBL)TYSND1
ZODIACTYSND1
Ontologies - Pathways
QuickGOQ2T9J0
Ontology : AmiGOprotease binding  serine-type endopeptidase activity  peroxisome  proteolysis  membrane  protein processing  regulation of fatty acid beta-oxidation  identical protein binding  protein homooligomerization  
Ontology : EGO-EBIprotease binding  serine-type endopeptidase activity  peroxisome  proteolysis  membrane  protein processing  regulation of fatty acid beta-oxidation  identical protein binding  protein homooligomerization  
NDEx NetworkTYSND1
Atlas of Cancer Signalling NetworkTYSND1
Wikipedia pathwaysTYSND1
Orthology - Evolution
OrthoDB219743
GeneTree (enSembl)ENSG00000156521
Phylogenetic Trees/Animal Genes : TreeFamTYSND1
HOVERGENQ2T9J0
HOGENOMQ2T9J0
Homologs : HomoloGeneTYSND1
Homology/Alignments : Family Browser (UCSC)TYSND1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTYSND1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TYSND1
dbVarTYSND1
ClinVarTYSND1
1000_GenomesTYSND1 
Exome Variant ServerTYSND1
ExAC (Exome Aggregation Consortium)TYSND1 (select the gene name)
Genetic variants : HAPMAP219743
Genomic Variants (DGV)TYSND1 [DGVbeta]
DECIPHER (Syndromes)10:71897737-71906496  ENSG00000156521
CONAN: Copy Number AnalysisTYSND1 
Mutations
ICGC Data PortalTYSND1 
TCGA Data PortalTYSND1 
Broad Tumor PortalTYSND1
OASIS PortalTYSND1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTYSND1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTYSND1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TYSND1
DgiDB (Drug Gene Interaction Database)TYSND1
DoCM (Curated mutations)TYSND1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TYSND1 (select a term)
intoGenTYSND1
Cancer3DTYSND1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611017   
Orphanet
MedgenTYSND1
Genetic Testing Registry TYSND1
NextProtQ2T9J0 [Medical]
TSGene219743
GENETestsTYSND1
Huge Navigator TYSND1 [HugePedia]
snp3D : Map Gene to Disease219743
BioCentury BCIQTYSND1
ClinGenTYSND1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219743
Chemical/Pharm GKB GenePA134968651
Clinical trialTYSND1
Miscellaneous
canSAR (ICR)TYSND1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTYSND1
EVEXTYSND1
GoPubMedTYSND1
iHOPTYSND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:32 CET 2017

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