Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TYSND1 (trypsin like peroxisomal matrix peptidase 1)

Identity

Alias (NCBI)NET41
HGNC (Hugo) TYSND1
HGNC Alias symbMGC34695
NET41
HGNC Alias nameperoxisomal cysteine endopeptidase
LocusID (NCBI) 219743
Atlas_Id 75395
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 70137981 and ends at 70146700 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TYSND1 (10q22.1) / AIFM2 (10q22.1)TYSND1 (10q22.1) / ANKRD11 (16q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TYSND1   28531
Cards
Entrez_Gene (NCBI)TYSND1    trypsin like peroxisomal matrix peptidase 1
AliasesNET41
GeneCards (Weizmann)TYSND1
Ensembl hg19 (Hinxton)ENSG00000156521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156521 [Gene_View]  ENSG00000156521 [Sequence]  chr10:70137981-70146700 [Contig_View]  TYSND1 [Vega]
ICGC DataPortalENSG00000156521
TCGA cBioPortalTYSND1
AceView (NCBI)TYSND1
Genatlas (Paris)TYSND1
SOURCE (Princeton)TYSND1
Genetics Home Reference (NIH)TYSND1
Genomic and cartography
GoldenPath hg38 (UCSC)TYSND1  -     chr10:70137981-70146700 -  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TYSND1  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTYSND1 - 10q22.1 [CytoView hg19]  TYSND1 - 10q22.1 [CytoView hg38]
ImmunoBaseENSG00000156521
Genome Data Viewer NCBITYSND1 [Mapview hg19]  
OMIM611017   
Gene and transcription
Genbank (Entrez)AK074968 AK097697 BC016840 BC030242 BC042629
RefSeq transcript (Entrez)NM_001040273 NM_173555
Consensus coding sequences : CCDS (NCBI)TYSND1
Gene ExpressionTYSND1 [ NCBI-GEO ]   TYSND1 [ EBI - ARRAY_EXPRESS ]   TYSND1 [ SEEK ]   TYSND1 [ MEM ]
Gene Expression Viewer (FireBrowse)TYSND1 [ Firebrowse - Broad ]
GenevisibleExpression of TYSND1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219743
GTEX Portal (Tissue expression)TYSND1
Human Protein AtlasENSG00000156521-TYSND1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2T9J0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2T9J0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2T9J0
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ2T9J0
Domains : Interpro (EBI)Pept_S1A_Tysnd1    Peptidase_S1_PA    TYSND1/DEG15   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TYSND1
SuperfamilyQ2T9J0
AlphaFold pdb e-kbQ2T9J0   
Human Protein Atlas [tissue]ENSG00000156521-TYSND1 [tissue]
HPRD15593
Protein Interaction databases
DIP (DOE-UCLA)Q2T9J0
IntAct (EBI)Q2T9J0
BioGRIDTYSND1
STRING (EMBL)TYSND1
ZODIACTYSND1
Ontologies - Pathways
QuickGOQ2T9J0
Ontology : AmiGOprotease binding  serine-type endopeptidase activity  serine-type endopeptidase activity  serine-type endopeptidase activity  peroxisome  peroxisome  peroxisomal matrix  cytosol  proteolysis  protein localization  membrane  protein processing  protein processing  protein processing  regulation of fatty acid beta-oxidation  regulation of fatty acid beta-oxidation  
Ontology : EGO-EBIprotease binding  serine-type endopeptidase activity  serine-type endopeptidase activity  serine-type endopeptidase activity  peroxisome  peroxisome  peroxisomal matrix  cytosol  proteolysis  protein localization  membrane  protein processing  protein processing  protein processing  regulation of fatty acid beta-oxidation  regulation of fatty acid beta-oxidation  
NDEx NetworkTYSND1
Atlas of Cancer Signalling NetworkTYSND1
Wikipedia pathwaysTYSND1
Orthology - Evolution
OrthoDB219743
GeneTree (enSembl)ENSG00000156521
Phylogenetic Trees/Animal Genes : TreeFamTYSND1
Homologs : HomoloGeneTYSND1
Homology/Alignments : Family Browser (UCSC)TYSND1
Gene fusions - Rearrangements
Fusion : QuiverTYSND1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTYSND1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TYSND1
dbVarTYSND1
ClinVarTYSND1
MonarchTYSND1
1000_GenomesTYSND1 
Exome Variant ServerTYSND1
GNOMAD BrowserENSG00000156521
Varsome BrowserTYSND1
ACMGTYSND1 variants
VarityQ2T9J0
Genomic Variants (DGV)TYSND1 [DGVbeta]
DECIPHERTYSND1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTYSND1 
Mutations
ICGC Data PortalTYSND1 
TCGA Data PortalTYSND1 
Broad Tumor PortalTYSND1
OASIS PortalTYSND1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTYSND1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTYSND1
Mutations and Diseases : HGMDTYSND1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTYSND1
DgiDB (Drug Gene Interaction Database)TYSND1
DoCM (Curated mutations)TYSND1
CIViC (Clinical Interpretations of Variants in Cancer)TYSND1
Cancer3DTYSND1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611017   
Orphanet
DisGeNETTYSND1
MedgenTYSND1
Genetic Testing Registry TYSND1
NextProtQ2T9J0 [Medical]
GENETestsTYSND1
Target ValidationTYSND1
Huge Navigator TYSND1 [HugePedia]
ClinGenTYSND1
Clinical trials, drugs, therapy
MyCancerGenomeTYSND1
Protein Interactions : CTDTYSND1
Pharm GKB GenePA134968651
PharosQ2T9J0
Clinical trialTYSND1
Miscellaneous
canSAR (ICR)TYSND1
HarmonizomeTYSND1
DataMed IndexTYSND1
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTYSND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:38 CEST 2021

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