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TYW1B (tRNA-yW synthesizing protein 1 homolog B)

Identity

Alias_namestRNA-yW synthesizing protein 1 homolog B (non-protein coding)
tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)
Alias_symbol (synonym)RSAFD2
MGC87315
NCRNA00069
LINC00069
Other alias
HGNC (Hugo) TYW1B
LocusID (NCBI) 441250
Atlas_Id 75396
Location 7q11.22  [Link to chromosome band 7q11]
Location_base_pair Starts at 72574507 and ends at 72828234 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TYW1B   33908
Cards
Entrez_Gene (NCBI)TYW1B  441250  tRNA-yW synthesizing protein 1 homolog B
AliasesLINC00069; NCRNA00069; RSAFD2
GeneCards (Weizmann)TYW1B
Ensembl hg19 (Hinxton)ENSG00000277149 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277149 [Gene_View]  chr7:72574507-72828234 [Contig_View]  TYW1B [Vega]
ICGC DataPortalENSG00000277149
TCGA cBioPortalTYW1B
AceView (NCBI)TYW1B
Genatlas (Paris)TYW1B
WikiGenes441250
SOURCE (Princeton)TYW1B
Genetics Home Reference (NIH)TYW1B
Genomic and cartography
GoldenPath hg38 (UCSC)TYW1B  -     chr7:72574507-72828234 -  7q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TYW1B  -     7q11.22   [Description]    (hg19-Feb_2009)
EnsemblTYW1B - 7q11.22 [CytoView hg19]  TYW1B - 7q11.22 [CytoView hg38]
Mapping of homologs : NCBITYW1B [Mapview hg19]  TYW1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI984113 AK294319 AK294401 AK301471 AK303225
RefSeq transcript (Entrez)NM_001145440 NM_001145441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TYW1B
Cluster EST : UnigeneHs.488614 [ NCBI ]
CGAP (NCI)Hs.488614
Alternative Splicing GalleryENSG00000277149
Gene ExpressionTYW1B [ NCBI-GEO ]   TYW1B [ EBI - ARRAY_EXPRESS ]   TYW1B [ SEEK ]   TYW1B [ MEM ]
Gene Expression Viewer (FireBrowse)TYW1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441250
GTEX Portal (Tissue expression)TYW1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUM6
Splice isoforms : SwissVarQ6NUM6
Catalytic activity : Enzyme4.1.3.44 [ Enzyme-Expasy ]   4.1.3.444.1.3.44 [ IntEnz-EBI ]   4.1.3.44 [ BRENDA ]   4.1.3.44 [ KEGG ]   
PhosPhoSitePlusQ6NUM6
Domaine pattern : Prosite (Expaxy)FLAVODOXIN_LIKE (PS50902)   
Domains : Interpro (EBI)Aldolase_TIM    Flavdoxin-like    Flavodoxin/NO_synth    Flavoprotein-like_dom    rSAM    tRNA_wybutosine-synth   
Domain families : Pfam (Sanger)Flavodoxin_1 (PF00258)    Radical_SAM (PF04055)    Wyosine_form (PF08608)   
Domain families : Pfam (NCBI)pfam00258    pfam04055    pfam08608   
Conserved Domain (NCBI)TYW1B
DMDM Disease mutations441250
Blocks (Seattle)TYW1B
SuperfamilyQ6NUM6
Human Protein AtlasENSG00000277149
Peptide AtlasQ6NUM6
IPIIPI00477740   IPI00923558   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUM6
IntAct (EBI)Q6NUM6
FunCoupENSG00000277149
BioGRIDTYW1B
STRING (EMBL)TYW1B
ZODIACTYW1B
Ontologies - Pathways
QuickGOQ6NUM6
Ontology : AmiGOtRNA processing  FMN binding  lyase activity  metal ion binding  4 iron, 4 sulfur cluster binding  oxidation-reduction process  
Ontology : EGO-EBItRNA processing  FMN binding  lyase activity  metal ion binding  4 iron, 4 sulfur cluster binding  oxidation-reduction process  
NDEx NetworkTYW1B
Atlas of Cancer Signalling NetworkTYW1B
Wikipedia pathwaysTYW1B
Orthology - Evolution
OrthoDB441250
GeneTree (enSembl)ENSG00000277149
Phylogenetic Trees/Animal Genes : TreeFamTYW1B
HOVERGENQ6NUM6
HOGENOMQ6NUM6
Homologs : HomoloGeneTYW1B
Homology/Alignments : Family Browser (UCSC)TYW1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTYW1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TYW1B
dbVarTYW1B
ClinVarTYW1B
1000_GenomesTYW1B 
Exome Variant ServerTYW1B
ExAC (Exome Aggregation Consortium)TYW1B (select the gene name)
Genetic variants : HAPMAP441250
Genomic Variants (DGV)TYW1B [DGVbeta]
DECIPHERTYW1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTYW1B 
Mutations
ICGC Data PortalTYW1B 
TCGA Data PortalTYW1B 
Broad Tumor PortalTYW1B
OASIS PortalTYW1B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTYW1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TYW1B
DgiDB (Drug Gene Interaction Database)TYW1B
DoCM (Curated mutations)TYW1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TYW1B (select a term)
intoGenTYW1B
Cancer3DTYW1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTYW1B
Genetic Testing Registry TYW1B
NextProtQ6NUM6 [Medical]
TSGene441250
GENETestsTYW1B
Target ValidationTYW1B
Huge Navigator TYW1B [HugePedia]
snp3D : Map Gene to Disease441250
BioCentury BCIQTYW1B
ClinGenTYW1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441250
Chemical/Pharm GKB GenePA164727375
Clinical trialTYW1B
Miscellaneous
canSAR (ICR)TYW1B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTYW1B
EVEXTYW1B
GoPubMedTYW1B
iHOPTYW1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:55 CEST 2017

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