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TYW3 (tRNA-yW synthesizing protein 3 homolog)

Identity

Alias_namesC1orf171
chromosome 1 open reading frame 171
tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ40918
Other alias
HGNC (Hugo) TYW3
LocusID (NCBI) 127253
Atlas_Id 75397
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 74733152 and ends at 74766676 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MCTP1 (5q15) / TYW3 (1p31.1)TYW3 (1p31.1) / SCRG1 (4q34.1)TYW3 (1p31.1) / TYW3 (1p31.1)
XPR1 (1q25.3) / TYW3 (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TYW3   24757
Cards
Entrez_Gene (NCBI)TYW3  127253  tRNA-yW synthesizing protein 3 homolog
AliasesC1orf171
GeneCards (Weizmann)TYW3
Ensembl hg19 (Hinxton)ENSG00000162623 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162623 [Gene_View]  chr1:74733152-74766676 [Contig_View]  TYW3 [Vega]
ICGC DataPortalENSG00000162623
TCGA cBioPortalTYW3
AceView (NCBI)TYW3
Genatlas (Paris)TYW3
WikiGenes127253
SOURCE (Princeton)TYW3
Genetics Home Reference (NIH)TYW3
Genomic and cartography
GoldenPath hg38 (UCSC)TYW3  -     chr1:74733152-74766676 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TYW3  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblTYW3 - 1p31.1 [CytoView hg19]  TYW3 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBITYW3 [Mapview hg19]  TYW3 [Mapview hg38]
OMIM611245   
Gene and transcription
Genbank (Entrez)AK098237 AK294264 AK299849 AK311272 BC009514
RefSeq transcript (Entrez)NM_001162916 NM_138467
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TYW3
Cluster EST : UnigeneHs.348411 [ NCBI ]
CGAP (NCI)Hs.348411
Alternative Splicing GalleryENSG00000162623
Gene ExpressionTYW3 [ NCBI-GEO ]   TYW3 [ EBI - ARRAY_EXPRESS ]   TYW3 [ SEEK ]   TYW3 [ MEM ]
Gene Expression Viewer (FireBrowse)TYW3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127253
GTEX Portal (Tissue expression)TYW3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IPR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IPR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IPR3
Splice isoforms : SwissVarQ6IPR3
Catalytic activity : Enzyme2.1.1.282 [ Enzyme-Expasy ]   2.1.1.2822.1.1.282 [ IntEnz-EBI ]   2.1.1.282 [ BRENDA ]   2.1.1.282 [ KEGG ]   
PhosPhoSitePlusQ6IPR3
Domains : Interpro (EBI)tRNA_yW-synthesising   
Domain families : Pfam (Sanger)TYW3 (PF02676)   
Domain families : Pfam (NCBI)pfam02676   
Conserved Domain (NCBI)TYW3
DMDM Disease mutations127253
Blocks (Seattle)TYW3
SuperfamilyQ6IPR3
Human Protein AtlasENSG00000162623
Peptide AtlasQ6IPR3
HPRD14036
IPIIPI00167237   IPI00910255   IPI00910140   
Protein Interaction databases
DIP (DOE-UCLA)Q6IPR3
IntAct (EBI)Q6IPR3
FunCoupENSG00000162623
BioGRIDTYW3
STRING (EMBL)TYW3
ZODIACTYW3
Ontologies - Pathways
QuickGOQ6IPR3
Ontology : AmiGOtRNA processing  methyltransferase activity  methylation  
Ontology : EGO-EBItRNA processing  methyltransferase activity  methylation  
NDEx NetworkTYW3
Atlas of Cancer Signalling NetworkTYW3
Wikipedia pathwaysTYW3
Orthology - Evolution
OrthoDB127253
GeneTree (enSembl)ENSG00000162623
Phylogenetic Trees/Animal Genes : TreeFamTYW3
HOVERGENQ6IPR3
HOGENOMQ6IPR3
Homologs : HomoloGeneTYW3
Homology/Alignments : Family Browser (UCSC)TYW3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTYW3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TYW3
dbVarTYW3
ClinVarTYW3
1000_GenomesTYW3 
Exome Variant ServerTYW3
ExAC (Exome Aggregation Consortium)TYW3 (select the gene name)
Genetic variants : HAPMAP127253
Genomic Variants (DGV)TYW3 [DGVbeta]
DECIPHERTYW3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTYW3 
Mutations
ICGC Data PortalTYW3 
TCGA Data PortalTYW3 
Broad Tumor PortalTYW3
OASIS PortalTYW3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTYW3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTYW3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TYW3
DgiDB (Drug Gene Interaction Database)TYW3
DoCM (Curated mutations)TYW3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TYW3 (select a term)
intoGenTYW3
Cancer3DTYW3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611245   
Orphanet
MedgenTYW3
Genetic Testing Registry TYW3
NextProtQ6IPR3 [Medical]
TSGene127253
GENETestsTYW3
Huge Navigator TYW3 [HugePedia]
snp3D : Map Gene to Disease127253
BioCentury BCIQTYW3
ClinGenTYW3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127253
Chemical/Pharm GKB GenePA142672420
Clinical trialTYW3
Miscellaneous
canSAR (ICR)TYW3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTYW3
EVEXTYW3
GoPubMedTYW3
iHOPTYW3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:00:28 CEST 2017

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