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U2AF1L4 (U2 small nuclear RNA auxiliary factor 1-like 4)

Identity

Alias_namesU2AF1L3
U2(RNU2) small nuclear RNA auxiliary factor 1-like 3
Alias_symbol (synonym)MGC33901
U2af26
Other aliasU2AF1-RS3
U2AF1L3V1
U2AF1RS3
HGNC (Hugo) U2AF1L4
LocusID (NCBI) 199746
Atlas_Id 75399
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36233428 and ends at 36236343 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)U2AF1L4   23020
Cards
Entrez_Gene (NCBI)U2AF1L4  199746  U2 small nuclear RNA auxiliary factor 1-like 4
AliasesU2AF1-RS3; U2AF1L3; U2AF1L3V1; U2AF1RS3; 
U2af26
GeneCards (Weizmann)U2AF1L4
Ensembl hg19 (Hinxton)ENSG00000161265 [Gene_View]  chr19:36233428-36236343 [Contig_View]  U2AF1L4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161265 [Gene_View]  chr19:36233428-36236343 [Contig_View]  U2AF1L4 [Vega]
ICGC DataPortalENSG00000161265
TCGA cBioPortalU2AF1L4
AceView (NCBI)U2AF1L4
Genatlas (Paris)U2AF1L4
WikiGenes199746
SOURCE (Princeton)U2AF1L4
Genetics Home Reference (NIH)U2AF1L4
Genomic and cartography
GoldenPath hg19 (UCSC)U2AF1L4  -     chr19:36233428-36236343 -  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)U2AF1L4  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblU2AF1L4 - 19q13.12 [CytoView hg19]  U2AF1L4 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIU2AF1L4 [Mapview hg19]  U2AF1L4 [Mapview hg38]
OMIM601080   
Gene and transcription
Genbank (Entrez)AI767079 AK092844 AK094213 AK303983 AY461582
RefSeq transcript (Entrez)NM_001040425 NM_144987
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_027934 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)U2AF1L4
Cluster EST : UnigeneHs.351558 [ NCBI ]
CGAP (NCI)Hs.351558
Alternative Splicing GalleryENSG00000161265
Gene ExpressionU2AF1L4 [ NCBI-GEO ]   U2AF1L4 [ EBI - ARRAY_EXPRESS ]   U2AF1L4 [ SEEK ]   U2AF1L4 [ MEM ]
Gene Expression Viewer (FireBrowse)U2AF1L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199746
GTEX Portal (Tissue expression)U2AF1L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WU68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WU68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WU68
Splice isoforms : SwissVarQ8WU68
PhosPhoSitePlusQ8WU68
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    RRM_dom_euk    U2_small    Znf_CCCH   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00076    pfam00642   
Domain families : Smart (EMBL)RRM_1 (SM00361)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)U2AF1L4
DMDM Disease mutations199746
Blocks (Seattle)U2AF1L4
SuperfamilyQ8WU68
Human Protein AtlasENSG00000161265
Peptide AtlasQ8WU68
HPRD03050
IPIIPI00871981   IPI00102851   IPI00872091   IPI00167971   
Protein Interaction databases
DIP (DOE-UCLA)Q8WU68
IntAct (EBI)Q8WU68
FunCoupENSG00000161265
BioGRIDU2AF1L4
STRING (EMBL)U2AF1L4
ZODIACU2AF1L4
Ontologies - Pathways
QuickGOQ8WU68
Ontology : AmiGOnucleotide binding  RNA binding  spliceosomal complex  cytoplasm  mRNA processing  RNA splicing  nuclear speck  metal ion binding  
Ontology : EGO-EBInucleotide binding  RNA binding  spliceosomal complex  cytoplasm  mRNA processing  RNA splicing  nuclear speck  metal ion binding  
NDEx NetworkU2AF1L4
Atlas of Cancer Signalling NetworkU2AF1L4
Wikipedia pathwaysU2AF1L4
Orthology - Evolution
OrthoDB199746
GeneTree (enSembl)ENSG00000161265
Phylogenetic Trees/Animal Genes : TreeFamU2AF1L4
HOVERGENQ8WU68
HOGENOMQ8WU68
Homologs : HomoloGeneU2AF1L4
Homology/Alignments : Family Browser (UCSC)U2AF1L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerU2AF1L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)U2AF1L4
dbVarU2AF1L4
ClinVarU2AF1L4
1000_GenomesU2AF1L4 
Exome Variant ServerU2AF1L4
ExAC (Exome Aggregation Consortium)U2AF1L4 (select the gene name)
Genetic variants : HAPMAP199746
Genomic Variants (DGV)U2AF1L4 [DGVbeta]
DECIPHER (Syndromes)19:36233428-36236343  ENSG00000161265
CONAN: Copy Number AnalysisU2AF1L4 
Mutations
ICGC Data PortalU2AF1L4 
TCGA Data PortalU2AF1L4 
Broad Tumor PortalU2AF1L4
OASIS PortalU2AF1L4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICU2AF1L4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDU2AF1L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch U2AF1L4
DgiDB (Drug Gene Interaction Database)U2AF1L4
DoCM (Curated mutations)U2AF1L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)U2AF1L4 (select a term)
intoGenU2AF1L4
Cancer3DU2AF1L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601080   
Orphanet
MedgenU2AF1L4
Genetic Testing Registry U2AF1L4
NextProtQ8WU68 [Medical]
TSGene199746
GENETestsU2AF1L4
Huge Navigator U2AF1L4 [HugePedia]
snp3D : Map Gene to Disease199746
BioCentury BCIQU2AF1L4
ClinGenU2AF1L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199746
Chemical/Pharm GKB GenePA164742763
Clinical trialU2AF1L4
Miscellaneous
canSAR (ICR)U2AF1L4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineU2AF1L4
EVEXU2AF1L4
GoPubMedU2AF1L4
iHOPU2AF1L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:33 CET 2017

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