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U2AF1L5 (U2 small nuclear RNA auxiliary factor 1 like 5)

Identity

Other alias-
HGNC (Hugo) U2AF1L5
LocusID (NCBI) 102724594
Atlas_Id 78256
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43092956 and ends at 43107606 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)U2AF1L5   51830
Cards
Entrez_Gene (NCBI)U2AF1L5  102724594  U2 small nuclear RNA auxiliary factor 1 like 5
Aliases
GeneCards (Weizmann)U2AF1L5
Ensembl hg19 (Hinxton)ENSG00000275895 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275895 [Gene_View]  chr21:43092956-43107606 [Contig_View]  U2AF1L5 [Vega]
ICGC DataPortalENSG00000275895
TCGA cBioPortalU2AF1L5
AceView (NCBI)U2AF1L5
Genatlas (Paris)U2AF1L5
WikiGenes102724594
SOURCE (Princeton)U2AF1L5
Genetics Home Reference (NIH)U2AF1L5
Genomic and cartography
GoldenPath hg38 (UCSC)U2AF1L5  -     chr21:43092956-43107606 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)U2AF1L5  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblU2AF1L5 - 21q22.3 [CytoView hg19]  U2AF1L5 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIU2AF1L5 [Mapview hg19]  U2AF1L5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI334628 AL522322 BG612658 CN280267 CN280269
RefSeq transcript (Entrez)NM_001320646 NM_001320648 NM_001320650 NM_001320651
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)U2AF1L5
Cluster EST : UnigeneHs.365116 [ NCBI ]
CGAP (NCI)Hs.365116
Alternative Splicing GalleryENSG00000275895
Gene ExpressionU2AF1L5 [ NCBI-GEO ]   U2AF1L5 [ EBI - ARRAY_EXPRESS ]   U2AF1L5 [ SEEK ]   U2AF1L5 [ MEM ]
Gene Expression Viewer (FireBrowse)U2AF1L5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102724594
GTEX Portal (Tissue expression)U2AF1L5
Human Protein AtlasENSG00000275895-U2AF1L5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DN76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DN76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DN76
Splice isoforms : SwissVarP0DN76
PhosPhoSitePlusP0DN76
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    RRM_dom_euk    U2AF_small    Znf_CCCH   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00076    pfam00642   
Domain families : Smart (EMBL)RRM (SM00360)  RRM_1 (SM00361)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)U2AF1L5
DMDM Disease mutations102724594
Blocks (Seattle)U2AF1L5
SuperfamilyP0DN76
Human Protein Atlas [tissue]ENSG00000275895-U2AF1L5 [tissue]
Peptide AtlasP0DN76
Protein Interaction databases
DIP (DOE-UCLA)P0DN76
IntAct (EBI)P0DN76
FunCoupENSG00000275895
BioGRIDU2AF1L5
STRING (EMBL)U2AF1L5
ZODIACU2AF1L5
Ontologies - Pathways
QuickGOP0DN76
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  nuclear speck  metal ion binding  U2AF  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  nuclear speck  metal ion binding  U2AF  
NDEx NetworkU2AF1L5
Atlas of Cancer Signalling NetworkU2AF1L5
Wikipedia pathwaysU2AF1L5
Orthology - Evolution
OrthoDB102724594
GeneTree (enSembl)ENSG00000275895
Phylogenetic Trees/Animal Genes : TreeFamU2AF1L5
HOVERGENP0DN76
HOGENOMP0DN76
Homologs : HomoloGeneU2AF1L5
Homology/Alignments : Family Browser (UCSC)U2AF1L5
Gene fusions - Rearrangements
Fusion: Tumor Portal U2AF1L5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerU2AF1L5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)U2AF1L5
dbVarU2AF1L5
ClinVarU2AF1L5
1000_GenomesU2AF1L5 
Exome Variant ServerU2AF1L5
ExAC (Exome Aggregation Consortium)ENSG00000275895
GNOMAD BrowserENSG00000275895
Genetic variants : HAPMAP102724594
Genomic Variants (DGV)U2AF1L5 [DGVbeta]
DECIPHERU2AF1L5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisU2AF1L5 
Mutations
ICGC Data PortalU2AF1L5 
TCGA Data PortalU2AF1L5 
Broad Tumor PortalU2AF1L5
OASIS PortalU2AF1L5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDU2AF1L5
BioMutasearch U2AF1L5
DgiDB (Drug Gene Interaction Database)U2AF1L5
DoCM (Curated mutations)U2AF1L5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)U2AF1L5 (select a term)
intoGenU2AF1L5
Cancer3DU2AF1L5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenU2AF1L5
Genetic Testing Registry U2AF1L5
NextProtP0DN76 [Medical]
TSGene102724594
GENETestsU2AF1L5
Target ValidationU2AF1L5
Huge Navigator U2AF1L5 [HugePedia]
snp3D : Map Gene to Disease102724594
BioCentury BCIQU2AF1L5
ClinGenU2AF1L5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724594
Clinical trialU2AF1L5
Miscellaneous
canSAR (ICR)U2AF1L5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineU2AF1L5
EVEXU2AF1L5
GoPubMedU2AF1L5
iHOPU2AF1L5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:46 CET 2017

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