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U2SURP (U2 snRNP-associated SURP domain containing)

Identity

Alias_namesU2 snRNP-associated SURP domain containing
Alias_symbol (synonym)fSAPa
SR140
Other alias
HGNC (Hugo) U2SURP
LocusID (NCBI) 23350
Atlas_Id 75401
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 142720372 and ends at 142779567 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANXA1 (9q21.13) / U2SURP (3q23)SHANK2 (11q13.3) / U2SURP (3q23)U2SURP (3q23) / PLSCR1 (3q24)
U2SURP (3q23) / U2SURP (3q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)U2SURP   30855
Cards
Entrez_Gene (NCBI)U2SURP  23350  U2 snRNP-associated SURP domain containing
AliasesSR140; fSAPa
GeneCards (Weizmann)U2SURP
Ensembl hg19 (Hinxton)ENSG00000163714 [Gene_View]  chr3:142720372-142779567 [Contig_View]  U2SURP [Vega]
Ensembl hg38 (Hinxton)ENSG00000163714 [Gene_View]  chr3:142720372-142779567 [Contig_View]  U2SURP [Vega]
ICGC DataPortalENSG00000163714
TCGA cBioPortalU2SURP
AceView (NCBI)U2SURP
Genatlas (Paris)U2SURP
WikiGenes23350
SOURCE (Princeton)U2SURP
Genetics Home Reference (NIH)U2SURP
Genomic and cartography
GoldenPath hg19 (UCSC)U2SURP  -     chr3:142720372-142779567 +  3q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)U2SURP  -     3q23   [Description]    (hg38-Dec_2013)
EnsemblU2SURP - 3q23 [CytoView hg19]  U2SURP - 3q23 [CytoView hg38]
Mapping of homologs : NCBIU2SURP [Mapview hg19]  U2SURP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002330 AK057679 AK074327 AK296440 BC006474
RefSeq transcript (Entrez)NM_001080415
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)U2SURP
Cluster EST : UnigeneHs.596572 [ NCBI ]
CGAP (NCI)Hs.596572
Alternative Splicing GalleryENSG00000163714
Gene ExpressionU2SURP [ NCBI-GEO ]   U2SURP [ EBI - ARRAY_EXPRESS ]   U2SURP [ SEEK ]   U2SURP [ MEM ]
Gene Expression Viewer (FireBrowse)U2SURP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23350
GTEX Portal (Tissue expression)U2SURP
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15042   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15042  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15042
Splice isoforms : SwissVarO15042
PhosPhoSitePlusO15042
Domaine pattern : Prosite (Expaxy)CID (PS51391)    RRM (PS50102)    SURP (PS50128)   
Domains : Interpro (EBI)CID_dom    ENTH_VHS    mRNA_splic_Cwf21    Nucleotide-bd_a/b_plait    RRM_dom    Surp   
Domain families : Pfam (Sanger)cwf21 (PF08312)    RRM_1 (PF00076)    Surp (PF01805)   
Domain families : Pfam (NCBI)pfam08312    pfam00076    pfam01805   
Domain families : Smart (EMBL)RPR (SM00582)  RRM (SM00360)  SWAP (SM00648)  
Conserved Domain (NCBI)U2SURP
DMDM Disease mutations23350
Blocks (Seattle)U2SURP
SuperfamilyO15042
Human Protein AtlasENSG00000163714
Peptide AtlasO15042
IPIIPI00143753   IPI00829908   IPI00790699   IPI00945586   IPI00944988   IPI00945524   IPI00945948   IPI00945148   IPI00966302   IPI00979562   
Protein Interaction databases
DIP (DOE-UCLA)O15042
IntAct (EBI)O15042
FunCoupENSG00000163714
BioGRIDU2SURP
STRING (EMBL)U2SURP
ZODIACU2SURP
Ontologies - Pathways
QuickGOO15042
Ontology : AmiGOnucleotide binding  protein binding  nucleus  nucleoplasm  RNA processing  poly(A) RNA binding  
Ontology : EGO-EBInucleotide binding  protein binding  nucleus  nucleoplasm  RNA processing  poly(A) RNA binding  
Pathways : KEGGSpliceosome   
NDEx NetworkU2SURP
Atlas of Cancer Signalling NetworkU2SURP
Wikipedia pathwaysU2SURP
Orthology - Evolution
OrthoDB23350
GeneTree (enSembl)ENSG00000163714
Phylogenetic Trees/Animal Genes : TreeFamU2SURP
HOVERGENO15042
HOGENOMO15042
Homologs : HomoloGeneU2SURP
Homology/Alignments : Family Browser (UCSC)U2SURP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerU2SURP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)U2SURP
dbVarU2SURP
ClinVarU2SURP
1000_GenomesU2SURP 
Exome Variant ServerU2SURP
ExAC (Exome Aggregation Consortium)U2SURP (select the gene name)
Genetic variants : HAPMAP23350
Genomic Variants (DGV)U2SURP [DGVbeta]
DECIPHER (Syndromes)3:142720372-142779567  ENSG00000163714
CONAN: Copy Number AnalysisU2SURP 
Mutations
ICGC Data PortalU2SURP 
TCGA Data PortalU2SURP 
Broad Tumor PortalU2SURP
OASIS PortalU2SURP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICU2SURP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDU2SURP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch U2SURP
DgiDB (Drug Gene Interaction Database)U2SURP
DoCM (Curated mutations)U2SURP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)U2SURP (select a term)
intoGenU2SURP
Cancer3DU2SURP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenU2SURP
Genetic Testing Registry U2SURP
NextProtO15042 [Medical]
TSGene23350
GENETestsU2SURP
Huge Navigator U2SURP [HugePedia]
snp3D : Map Gene to Disease23350
BioCentury BCIQU2SURP
ClinGenU2SURP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23350
Clinical trialU2SURP
Miscellaneous
canSAR (ICR)U2SURP (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineU2SURP
EVEXU2SURP
GoPubMedU2SURP
iHOPU2SURP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:33 CET 2017

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