U2SURP (U2 snRNP associated SURP domain containing)

2014-11-01  

Identity

HGNC
U2SURP
LOCATION
3q23
LOCUSID
23350
ALIAS
SR140,fSAPa
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 23350
MIM: 617849
HGNC: 30855
Ensembl: ENSG00000163714

Variants:

dbSNP: 23350
ClinVar: 23350
TCGA: ENSG00000163714
COSMIC: U2SURP

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000163714ENST00000463563H0Y8D9
ENSG00000163714ENST00000465175C9JDJ7
ENSG00000163714ENST00000467348H7C4V2
ENSG00000163714ENST00000473835O15042
ENSG00000163714ENST00000488497E7EW00
ENSG00000163714ENST00000493598E7ET15
ENSG00000163714ENST00000493782C9J5L1
ENSG00000163714ENST00000600150U3KPT1

Expression (GTEx)

0
10
20
30
40
50
60
70
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
SpliceosomeKEGGko03040
SpliceosomeKEGGhsa03040
Gene ExpressionREACTOMER-HSA-74160
Processing of Capped Intron-Containing Pre-mRNAREACTOMER-HSA-72203
mRNA SplicingREACTOMER-HSA-72172
mRNA Splicing - Major PathwayREACTOMER-HSA-72163

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
309771182019U2-related proteins CHERP and SR140 contribute to colorectal tumorigenesis via alternative splicing regulation.0

Citation

Dessen P

U2SURP (U2 snRNP associated SURP domain containing)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/75401/u2surp