Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UBALD1 (UBA-like domain containing 1)

Identity

Alias_namesFAM100A
family with sequence similarity 100, member A
UBA-like domain containing 1
Other aliasPP11303
HGNC (Hugo) UBALD1
LocusID (NCBI) 124402
Atlas_Id 75408
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4658884 and ends at 4664927 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UBN1 (16p13.3) / UBALD1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBALD1   29576
Cards
Entrez_Gene (NCBI)UBALD1  124402  UBA-like domain containing 1
AliasesFAM100A; PP11303
GeneCards (Weizmann)UBALD1
Ensembl hg19 (Hinxton)ENSG00000153443 [Gene_View]  chr16:4658884-4664927 [Contig_View]  UBALD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153443 [Gene_View]  chr16:4658884-4664927 [Contig_View]  UBALD1 [Vega]
ICGC DataPortalENSG00000153443
TCGA cBioPortalUBALD1
AceView (NCBI)UBALD1
Genatlas (Paris)UBALD1
WikiGenes124402
SOURCE (Princeton)UBALD1
Genetics Home Reference (NIH)UBALD1
Genomic and cartography
GoldenPath hg19 (UCSC)UBALD1  -     chr16:4658884-4664927 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UBALD1  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblUBALD1 - 16p13.3 [CytoView hg19]  UBALD1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIUBALD1 [Mapview hg19]  UBALD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF370434 AF447881 AK055785 AK056747 AW015675
RefSeq transcript (Entrez)NM_145253
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)UBALD1
Cluster EST : UnigeneHs.513313 [ NCBI ]
CGAP (NCI)Hs.513313
Alternative Splicing GalleryENSG00000153443
Gene ExpressionUBALD1 [ NCBI-GEO ]   UBALD1 [ EBI - ARRAY_EXPRESS ]   UBALD1 [ SEEK ]   UBALD1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBALD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124402
GTEX Portal (Tissue expression)UBALD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB05
Splice isoforms : SwissVarQ8TB05
PhosPhoSitePlusQ8TB05
Domains : Interpro (EBI)UBA-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UBALD1
DMDM Disease mutations124402
Blocks (Seattle)UBALD1
SuperfamilyQ8TB05
Human Protein AtlasENSG00000153443
Peptide AtlasQ8TB05
HPRD14025
IPIIPI00152091   IPI00434706   IPI00435915   IPI00982895   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB05
IntAct (EBI)Q8TB05
FunCoupENSG00000153443
BioGRIDUBALD1
STRING (EMBL)UBALD1
ZODIACUBALD1
Ontologies - Pathways
QuickGOQ8TB05
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUBALD1
Atlas of Cancer Signalling NetworkUBALD1
Wikipedia pathwaysUBALD1
Orthology - Evolution
OrthoDB124402
GeneTree (enSembl)ENSG00000153443
Phylogenetic Trees/Animal Genes : TreeFamUBALD1
HOVERGENQ8TB05
HOGENOMQ8TB05
Homologs : HomoloGeneUBALD1
Homology/Alignments : Family Browser (UCSC)UBALD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBALD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBALD1
dbVarUBALD1
ClinVarUBALD1
1000_GenomesUBALD1 
Exome Variant ServerUBALD1
ExAC (Exome Aggregation Consortium)UBALD1 (select the gene name)
Genetic variants : HAPMAP124402
Genomic Variants (DGV)UBALD1 [DGVbeta]
DECIPHER (Syndromes)16:4658884-4664927  ENSG00000153443
CONAN: Copy Number AnalysisUBALD1 
Mutations
ICGC Data PortalUBALD1 
TCGA Data PortalUBALD1 
Broad Tumor PortalUBALD1
OASIS PortalUBALD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUBALD1
BioMutasearch UBALD1
DgiDB (Drug Gene Interaction Database)UBALD1
DoCM (Curated mutations)UBALD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBALD1 (select a term)
intoGenUBALD1
Cancer3DUBALD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUBALD1
Genetic Testing Registry UBALD1
NextProtQ8TB05 [Medical]
TSGene124402
GENETestsUBALD1
Huge Navigator UBALD1 [HugePedia]
snp3D : Map Gene to Disease124402
BioCentury BCIQUBALD1
ClinGenUBALD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124402
Chemical/Pharm GKB GenePA142671782
Clinical trialUBALD1
Miscellaneous
canSAR (ICR)UBALD1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBALD1
EVEXUBALD1
GoPubMedUBALD1
iHOPUBALD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:50:35 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.