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UBALD2 (UBA like domain containing 2)

Identity

Alias_namesFAM100B
family with sequence similarity 100, member B
UBA-like domain containing 2
Alias_symbol (synonym)MGC29814
Other alias
HGNC (Hugo) UBALD2
LocusID (NCBI) 283991
Atlas_Id 75409
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 76265205 and ends at 76271298 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
UBALD2 (17q25.1) / TIMP2 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBALD2   28438
Cards
Entrez_Gene (NCBI)UBALD2  283991  UBA like domain containing 2
AliasesFAM100B
GeneCards (Weizmann)UBALD2
Ensembl hg19 (Hinxton)ENSG00000185262 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185262 [Gene_View]  chr17:76265205-76271298 [Contig_View]  UBALD2 [Vega]
ICGC DataPortalENSG00000185262
TCGA cBioPortalUBALD2
AceView (NCBI)UBALD2
Genatlas (Paris)UBALD2
WikiGenes283991
SOURCE (Princeton)UBALD2
Genetics Home Reference (NIH)UBALD2
Genomic and cartography
GoldenPath hg38 (UCSC)UBALD2  -     chr17:76265205-76271298 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBALD2  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblUBALD2 - 17q25.1 [CytoView hg19]  UBALD2 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIUBALD2 [Mapview hg19]  UBALD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035511 BC060859 BU167469 CT004974 EU176314
RefSeq transcript (Entrez)NM_182565
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBALD2
Cluster EST : UnigeneHs.744981 [ NCBI ]
CGAP (NCI)Hs.744981
Alternative Splicing GalleryENSG00000185262
Gene ExpressionUBALD2 [ NCBI-GEO ]   UBALD2 [ EBI - ARRAY_EXPRESS ]   UBALD2 [ SEEK ]   UBALD2 [ MEM ]
Gene Expression Viewer (FireBrowse)UBALD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283991
GTEX Portal (Tissue expression)UBALD2
Human Protein AtlasENSG00000185262-UBALD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYN6
Splice isoforms : SwissVarQ8IYN6
PhosPhoSitePlusQ8IYN6
Domains : Interpro (EBI)UBA-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UBALD2
DMDM Disease mutations283991
Blocks (Seattle)UBALD2
PDB (SRS)2DZL   
PDB (PDBSum)2DZL   
PDB (IMB)2DZL   
PDB (RSDB)2DZL   
Structural Biology KnowledgeBase2DZL   
SCOP (Structural Classification of Proteins)2DZL   
CATH (Classification of proteins structures)2DZL   
SuperfamilyQ8IYN6
Human Protein Atlas [tissue]ENSG00000185262-UBALD2 [tissue]
Peptide AtlasQ8IYN6
HPRD14533
IPIIPI00217812   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYN6
IntAct (EBI)Q8IYN6
FunCoupENSG00000185262
BioGRIDUBALD2
STRING (EMBL)UBALD2
ZODIACUBALD2
Ontologies - Pathways
QuickGOQ8IYN6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUBALD2
Atlas of Cancer Signalling NetworkUBALD2
Wikipedia pathwaysUBALD2
Orthology - Evolution
OrthoDB283991
GeneTree (enSembl)ENSG00000185262
Phylogenetic Trees/Animal Genes : TreeFamUBALD2
HOVERGENQ8IYN6
HOGENOMQ8IYN6
Homologs : HomoloGeneUBALD2
Homology/Alignments : Family Browser (UCSC)UBALD2
Gene fusions - Rearrangements
Fusion: Tumor Portal UBALD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBALD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBALD2
dbVarUBALD2
ClinVarUBALD2
1000_GenomesUBALD2 
Exome Variant ServerUBALD2
ExAC (Exome Aggregation Consortium)ENSG00000185262
GNOMAD BrowserENSG00000185262
Genetic variants : HAPMAP283991
Genomic Variants (DGV)UBALD2 [DGVbeta]
DECIPHERUBALD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBALD2 
Mutations
ICGC Data PortalUBALD2 
TCGA Data PortalUBALD2 
Broad Tumor PortalUBALD2
OASIS PortalUBALD2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUBALD2
BioMutasearch UBALD2
DgiDB (Drug Gene Interaction Database)UBALD2
DoCM (Curated mutations)UBALD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBALD2 (select a term)
intoGenUBALD2
Cancer3DUBALD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUBALD2
Genetic Testing Registry UBALD2
NextProtQ8IYN6 [Medical]
TSGene283991
GENETestsUBALD2
Target ValidationUBALD2
Huge Navigator UBALD2 [HugePedia]
snp3D : Map Gene to Disease283991
BioCentury BCIQUBALD2
ClinGenUBALD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283991
Chemical/Pharm GKB GenePA142671783
Clinical trialUBALD2
Miscellaneous
canSAR (ICR)UBALD2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBALD2
EVEXUBALD2
GoPubMedUBALD2
iHOPUBALD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:48 CET 2017

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