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UBAP1 (ubiquitin associated protein 1)

Identity

Alias (NCBI)NAG20
SPG80
UAP
UBAP
UBAP-1
HGNC (Hugo) UBAP1
HGNC Previous nameUBAP
HGNC Previous nameubiquitin associated protein
LocusID (NCBI) 51271
Atlas_Id 42741
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34179043 and ends at 34252523 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ALDH7A1 (5q23.2)::UBAP1 (9p13.3)MFHAS1 (8p23.1)::UBAP1 (9p13.3)PCDH10 (4q28.3)::UBAP1 (9p13.3)
PURG (8p12)::UBAP1 (9p13.3)TMEM11 (17p11.2)::UBAP1 (9p13.3)UBAP1 (9p13.3)::PPP2R5A (1q32.3)
UBAP1 (9p13.3)::PURG (8p12)UBAP1 (9p13.3)::SEPT9 (17q25.2)UBAP1 (9p13.3)::SP1 (12q13.13)
UBAP1 (9p13.3)::TPRKB (2p13.1)UBAP1 (9p13.3)::UBAP1 (9p13.3)UBAP1 (9p13.3)::UBAP2 (9p13.3)
UBAP2 (9p13.3)::UBAP1 (9p13.3)ZCCHC7 (9p13.2)::UBAP1 (9p13.3)TMEM11 17p11.2::UBAP1 9p13.3
UBAP1 9p13.3::UBAP2 9p13.3ZCCHC7 9p13.2::UBAP1 9p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(9;9)(p13;p13) UBAP1::DCAF12


External links

Nomenclature
HGNC (Hugo)UBAP1   12461
Cards
Entrez_Gene (NCBI)UBAP1    ubiquitin associated protein 1
AliasesNAG20; SPG80; UAP; UBAP; 
UBAP-1
GeneCards (Weizmann)UBAP1
Ensembl hg19 (Hinxton)ENSG00000165006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165006 [Gene_View]  ENSG00000165006 [Sequence]  chr9:34179043-34252523 [Contig_View]  UBAP1 [Vega]
ICGC DataPortalENSG00000165006
TCGA cBioPortalUBAP1
AceView (NCBI)UBAP1
Genatlas (Paris)UBAP1
SOURCE (Princeton)UBAP1
Genetics Home Reference (NIH)UBAP1
Genomic and cartography
GoldenPath hg38 (UCSC)UBAP1  -     chr9:34179043-34252523 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBAP1  -     9p13.3   [Description]    (hg19-Feb_2009)
GoldenPathUBAP1 - 9p13.3 [CytoView hg19]  UBAP1 - 9p13.3 [CytoView hg38]
ImmunoBaseENSG00000165006
Genome Data Viewer NCBIUBAP1 [Mapview hg19]  
OMIM609787   618418   
Gene and transcription
Genbank (Entrez)AF222043 AK074426 AK074724 AK074745 AK074812
RefSeq transcript (Entrez)NM_001171201 NM_001171202 NM_001171203 NM_001171204 NM_016525
Consensus coding sequences : CCDS (NCBI)UBAP1
Gene ExpressionUBAP1 [ NCBI-GEO ]   UBAP1 [ EBI - ARRAY_EXPRESS ]   UBAP1 [ SEEK ]   UBAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBAP1 [ Firebrowse - Broad ]
GenevisibleExpression of UBAP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51271
GTEX Portal (Tissue expression)UBAP1
Human Protein AtlasENSG00000165006-UBAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UBAP1
Human Protein Atlas [tissue]ENSG00000165006-UBAP1 [tissue]
HPRD15597
Protein Interaction databases
BioGRIDUBAP1
STRING (EMBL)UBAP1
ZODIACUBAP1
Ontologies - Pathways
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUBAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:39:28 CET 2022

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