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UBAP1 (ubiquitin associated protein 1)

Identity

Alias_namesUBAP
ubiquitin associated protein
Other aliasNAG20
UAP
UBAP-1
HGNC (Hugo) UBAP1
LocusID (NCBI) 51271
Atlas_Id 42741
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34179005 and ends at 34252523 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALDH7A1 (5q23.2) / UBAP1 (9p13.3)MFHAS1 (8p23.1) / UBAP1 (9p13.3)PCDH10 (4q28.3) / UBAP1 (9p13.3)
PURG (8p12) / UBAP1 (9p13.3)TMEM11 (17p11.2) / UBAP1 (9p13.3)UBAP1 (9p13.3) / PPP2R5A (1q32.3)
UBAP1 (9p13.3) / PURG (8p12)UBAP1 (9p13.3) / SEPT9 (17q25.2)UBAP1 (9p13.3) / SP1 (12q13.13)
UBAP1 (9p13.3) / TPRKB (2p13.1)UBAP1 (9p13.3) / UBAP1 (9p13.3)UBAP1 (9p13.3) / UBAP2 (9p13.3)
UBAP2 (9p13.3) / UBAP1 (9p13.3)ZCCHC7 (9p13.2) / UBAP1 (9p13.3)TMEM11 17p11.2 / UBAP1 9p13.3
UBAP1 9p13.3 / UBAP2 9p13.3ZCCHC7 9p13.2 / UBAP1 9p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)UBAP1   12461
Cards
Entrez_Gene (NCBI)UBAP1  51271  ubiquitin associated protein 1
AliasesNAG20; UAP; UBAP; UBAP-1
GeneCards (Weizmann)UBAP1
Ensembl hg19 (Hinxton)ENSG00000165006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165006 [Gene_View]  chr9:34179005-34252523 [Contig_View]  UBAP1 [Vega]
ICGC DataPortalENSG00000165006
TCGA cBioPortalUBAP1
AceView (NCBI)UBAP1
Genatlas (Paris)UBAP1
WikiGenes51271
SOURCE (Princeton)UBAP1
Genetics Home Reference (NIH)UBAP1
Genomic and cartography
GoldenPath hg38 (UCSC)UBAP1  -     chr9:34179005-34252523 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBAP1  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblUBAP1 - 9p13.3 [CytoView hg19]  UBAP1 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIUBAP1 [Mapview hg19]  UBAP1 [Mapview hg38]
OMIM609787   
Gene and transcription
Genbank (Entrez)AF222043 AK074426 AK074724 AK074745 AK074812
RefSeq transcript (Entrez)NM_001171201 NM_001171202 NM_001171203 NM_001171204 NM_016525
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBAP1
Cluster EST : UnigeneHs.268963 [ NCBI ]
CGAP (NCI)Hs.268963
Alternative Splicing GalleryENSG00000165006
Gene ExpressionUBAP1 [ NCBI-GEO ]   UBAP1 [ EBI - ARRAY_EXPRESS ]   UBAP1 [ SEEK ]   UBAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51271
GTEX Portal (Tissue expression)UBAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ09
Splice isoforms : SwissVarQ9NZ09
PhosPhoSitePlusQ9NZ09
Domaine pattern : Prosite (Expaxy)UBA (PS50030)    UMA (PS51497)   
Domains : Interpro (EBI)UBA    UBA-like    UMA   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UBAP1
DMDM Disease mutations51271
Blocks (Seattle)UBAP1
PDB (SRS)1WGN    4AE4    5LM1   
PDB (PDBSum)1WGN    4AE4    5LM1   
PDB (IMB)1WGN    4AE4    5LM1   
PDB (RSDB)1WGN    4AE4    5LM1   
Structural Biology KnowledgeBase1WGN    4AE4    5LM1   
SCOP (Structural Classification of Proteins)1WGN    4AE4    5LM1   
CATH (Classification of proteins structures)1WGN    4AE4    5LM1   
SuperfamilyQ9NZ09
Human Protein AtlasENSG00000165006
Peptide AtlasQ9NZ09
HPRD15597
IPIIPI00301305   IPI00514788   IPI00954786   IPI00954916   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ09
IntAct (EBI)Q9NZ09
FunCoupENSG00000165006
BioGRIDUBAP1
STRING (EMBL)UBAP1
ZODIACUBAP1
Ontologies - Pathways
QuickGOQ9NZ09
Ontology : AmiGOESCRT I complex  protein binding  cytoplasm  Golgi apparatus  cytosol  plasma membrane  protein transport  ubiquitin binding  ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  
Ontology : EGO-EBIESCRT I complex  protein binding  cytoplasm  Golgi apparatus  cytosol  plasma membrane  protein transport  ubiquitin binding  ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  
NDEx NetworkUBAP1
Atlas of Cancer Signalling NetworkUBAP1
Wikipedia pathwaysUBAP1
Orthology - Evolution
OrthoDB51271
GeneTree (enSembl)ENSG00000165006
Phylogenetic Trees/Animal Genes : TreeFamUBAP1
HOVERGENQ9NZ09
HOGENOMQ9NZ09
Homologs : HomoloGeneUBAP1
Homology/Alignments : Family Browser (UCSC)UBAP1
Gene fusions - Rearrangements
Fusion : MitelmanPURG/UBAP1 [8p12/9p13.3]  [t(8;9)(p12;p13)]  
Fusion : MitelmanTMEM11/UBAP1 [17p11.2/9p13.3]  [t(9;17)(p13;p11)]  
Fusion : MitelmanUBAP1/PURG [9p13.3/8p12]  [t(8;9)(p12;p13)]  
Fusion : MitelmanUBAP1/UBAP2 [9p13.3/9p13.3]  [t(9;9)(p13;p13)]  
Fusion : MitelmanZCCHC7/UBAP1 [9p13.2/9p13.3]  [t(9;9)(p13;p13)]  
Fusion: TCGATMEM11 17p11.2 UBAP1 9p13.3 HNSC
Fusion: TCGAUBAP1 9p13.3 UBAP2 9p13.3 BRCA
Fusion: TCGAZCCHC7 9p13.2 UBAP1 9p13.3 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBAP1
dbVarUBAP1
ClinVarUBAP1
1000_GenomesUBAP1 
Exome Variant ServerUBAP1
ExAC (Exome Aggregation Consortium)UBAP1 (select the gene name)
Genetic variants : HAPMAP51271
Genomic Variants (DGV)UBAP1 [DGVbeta]
DECIPHERUBAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBAP1 
Mutations
ICGC Data PortalUBAP1 
TCGA Data PortalUBAP1 
Broad Tumor PortalUBAP1
OASIS PortalUBAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBAP1
DgiDB (Drug Gene Interaction Database)UBAP1
DoCM (Curated mutations)UBAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBAP1 (select a term)
intoGenUBAP1
Cancer3DUBAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609787   
Orphanet
MedgenUBAP1
Genetic Testing Registry UBAP1
NextProtQ9NZ09 [Medical]
TSGene51271
GENETestsUBAP1
Huge Navigator UBAP1 [HugePedia]
snp3D : Map Gene to Disease51271
BioCentury BCIQUBAP1
ClinGenUBAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51271
Chemical/Pharm GKB GenePA37111
Clinical trialUBAP1
Miscellaneous
canSAR (ICR)UBAP1 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBAP1
EVEXUBAP1
GoPubMedUBAP1
iHOPUBAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:42:59 CEST 2017

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