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UBAP1L (ubiquitin associated protein 1-like)

Identity

Other aliasUBAP-1L
HGNC (Hugo) UBAP1L
LocusID (NCBI) 390595
Atlas_Id 75410
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65385342 and ends at 65398697 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UBAP1L (15q22.31) / UBAP1L (15q22.31)UBAP1L (15q22.31) / ZYX (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBAP1L   40028
Cards
Entrez_Gene (NCBI)UBAP1L  390595  ubiquitin associated protein 1-like
AliasesUBAP-1L
GeneCards (Weizmann)UBAP1L
Ensembl hg19 (Hinxton)ENSG00000246922 [Gene_View]  chr15:65385342-65398697 [Contig_View]  UBAP1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000246922 [Gene_View]  chr15:65385342-65398697 [Contig_View]  UBAP1L [Vega]
ICGC DataPortalENSG00000246922
TCGA cBioPortalUBAP1L
AceView (NCBI)UBAP1L
Genatlas (Paris)UBAP1L
WikiGenes390595
SOURCE (Princeton)UBAP1L
Genetics Home Reference (NIH)UBAP1L
Genomic and cartography
GoldenPath hg19 (UCSC)UBAP1L  -     chr15:65385342-65398697 -  15q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UBAP1L  -     15q22.31   [Description]    (hg38-Dec_2013)
EnsemblUBAP1L - 15q22.31 [CytoView hg19]  UBAP1L - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIUBAP1L [Mapview hg19]  UBAP1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023802 AL359606 BC127916 BQ183317 BQ677048
RefSeq transcript (Entrez)NM_001163692
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)UBAP1L
Cluster EST : UnigeneHs.737497 [ NCBI ]
CGAP (NCI)Hs.737497
Alternative Splicing GalleryENSG00000246922
Gene ExpressionUBAP1L [ NCBI-GEO ]   UBAP1L [ EBI - ARRAY_EXPRESS ]   UBAP1L [ SEEK ]   UBAP1L [ MEM ]
Gene Expression Viewer (FireBrowse)UBAP1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390595
GTEX Portal (Tissue expression)UBAP1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtF5GYI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF5GYI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF5GYI3
Splice isoforms : SwissVarF5GYI3
PhosPhoSitePlusF5GYI3
Domaine pattern : Prosite (Expaxy)UMA (PS51497)   
Domains : Interpro (EBI)UMA   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UBAP1L
DMDM Disease mutations390595
Blocks (Seattle)UBAP1L
SuperfamilyF5GYI3
Human Protein AtlasENSG00000246922
Peptide AtlasF5GYI3
IPIIPI00399409   
Protein Interaction databases
DIP (DOE-UCLA)F5GYI3
IntAct (EBI)F5GYI3
FunCoupENSG00000246922
BioGRIDUBAP1L
STRING (EMBL)UBAP1L
ZODIACUBAP1L
Ontologies - Pathways
QuickGOF5GYI3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUBAP1L
Atlas of Cancer Signalling NetworkUBAP1L
Wikipedia pathwaysUBAP1L
Orthology - Evolution
OrthoDB390595
GeneTree (enSembl)ENSG00000246922
Phylogenetic Trees/Animal Genes : TreeFamUBAP1L
HOVERGENF5GYI3
HOGENOMF5GYI3
Homologs : HomoloGeneUBAP1L
Homology/Alignments : Family Browser (UCSC)UBAP1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBAP1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBAP1L
dbVarUBAP1L
ClinVarUBAP1L
1000_GenomesUBAP1L 
Exome Variant ServerUBAP1L
ExAC (Exome Aggregation Consortium)UBAP1L (select the gene name)
Genetic variants : HAPMAP390595
Genomic Variants (DGV)UBAP1L [DGVbeta]
DECIPHER (Syndromes)15:65385342-65398697  ENSG00000246922
CONAN: Copy Number AnalysisUBAP1L 
Mutations
ICGC Data PortalUBAP1L 
TCGA Data PortalUBAP1L 
Broad Tumor PortalUBAP1L
OASIS PortalUBAP1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBAP1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBAP1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBAP1L
DgiDB (Drug Gene Interaction Database)UBAP1L
DoCM (Curated mutations)UBAP1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBAP1L (select a term)
intoGenUBAP1L
Cancer3DUBAP1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUBAP1L
Genetic Testing Registry UBAP1L
NextProtF5GYI3 [Medical]
TSGene390595
GENETestsUBAP1L
Huge Navigator UBAP1L [HugePedia]
snp3D : Map Gene to Disease390595
BioCentury BCIQUBAP1L
ClinGenUBAP1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390595
Clinical trialUBAP1L
Miscellaneous
canSAR (ICR)UBAP1L (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBAP1L
EVEXUBAP1L
GoPubMedUBAP1L
iHOPUBAP1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:35 CET 2017

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