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UBAP2L (ubiquitin associated protein 2 like)

Identity

Alias_namesubiquitin associated protein 2-like
Alias_symbol (synonym)NICE-4
KIAA0144
Other aliasNICE4
HGNC (Hugo) UBAP2L
LocusID (NCBI) 9898
Atlas_Id 55303
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 154220172 and ends at 154263505 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BOLA2 (16p11.2) / UBAP2L (1q21.3)LOC100130987 (11q13.2) / UBAP2L (1q21.3)PPDPF (20q13.33) / UBAP2L (1q21.3)
UBAP2L (1q21.3) / AKT1S1 (19q13.33)UBAP2L (1q21.3) / EEFSEC (3q21.3)UBAP2L (1q21.3) / KIAA1614 (1q25.3)
UBAP2L (1q21.3) / MAD1L1 (7p22.3)YDJC (22q11.21) / UBAP2L (1q21.3)UBAP2L 1q21.3 / EEFSEC 3q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBAP2L   29877
Cards
Entrez_Gene (NCBI)UBAP2L  9898  ubiquitin associated protein 2 like
AliasesNICE-4; NICE4
GeneCards (Weizmann)UBAP2L
Ensembl hg19 (Hinxton)ENSG00000143569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143569 [Gene_View]  chr1:154220172-154263505 [Contig_View]  UBAP2L [Vega]
ICGC DataPortalENSG00000143569
TCGA cBioPortalUBAP2L
AceView (NCBI)UBAP2L
Genatlas (Paris)UBAP2L
WikiGenes9898
SOURCE (Princeton)UBAP2L
Genetics Home Reference (NIH)UBAP2L
Genomic and cartography
GoldenPath hg38 (UCSC)UBAP2L  -     chr1:154220172-154263505 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBAP2L  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblUBAP2L - 1q21.3 [CytoView hg19]  UBAP2L - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIUBAP2L [Mapview hg19]  UBAP2L [Mapview hg38]
OMIM616472   
Gene and transcription
Genbank (Entrez)AJ243668 AJ243669 AJ243670 AK124294 AK302662
RefSeq transcript (Entrez)NM_001127320 NM_001287815 NM_001287816 NM_001330730 NM_014847
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBAP2L
Cluster EST : UnigeneHs.490551 [ NCBI ]
CGAP (NCI)Hs.490551
Alternative Splicing GalleryENSG00000143569
Gene ExpressionUBAP2L [ NCBI-GEO ]   UBAP2L [ EBI - ARRAY_EXPRESS ]   UBAP2L [ SEEK ]   UBAP2L [ MEM ]
Gene Expression Viewer (FireBrowse)UBAP2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9898
GTEX Portal (Tissue expression)UBAP2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14157   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14157  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14157
Splice isoforms : SwissVarQ14157
PhosPhoSitePlusQ14157
Domaine pattern : Prosite (Expaxy)UBA (PS50030)   
Domains : Interpro (EBI)DUF3697_Uba2    UBA    UBA-like   
Domain families : Pfam (Sanger)DUF3697 (PF12478)   
Domain families : Pfam (NCBI)pfam12478   
Domain families : Smart (EMBL)UBA (SM00165)  
Conserved Domain (NCBI)UBAP2L
DMDM Disease mutations9898
Blocks (Seattle)UBAP2L
SuperfamilyQ14157
Human Protein AtlasENSG00000143569
Peptide AtlasQ14157
HPRD06665
IPIIPI00029019   IPI00514856   IPI00181306   IPI00946257   IPI00646016   IPI00977741   IPI00005416   IPI00643473   IPI00645444   IPI00644587   IPI00645155   
Protein Interaction databases
DIP (DOE-UCLA)Q14157
IntAct (EBI)Q14157
FunCoupENSG00000143569
BioGRIDUBAP2L
STRING (EMBL)UBAP2L
ZODIACUBAP2L
Ontologies - Pathways
QuickGOQ14157
Ontology : AmiGORNA binding  protein binding  Ada2/Gcn5/Ada3 transcription activator complex  cytoplasm  binding of sperm to zona pellucida  positive regulation of gene expression  PcG protein complex  hematopoietic stem cell homeostasis  
Ontology : EGO-EBIRNA binding  protein binding  Ada2/Gcn5/Ada3 transcription activator complex  cytoplasm  binding of sperm to zona pellucida  positive regulation of gene expression  PcG protein complex  hematopoietic stem cell homeostasis  
NDEx NetworkUBAP2L
Atlas of Cancer Signalling NetworkUBAP2L
Wikipedia pathwaysUBAP2L
Orthology - Evolution
OrthoDB9898
GeneTree (enSembl)ENSG00000143569
Phylogenetic Trees/Animal Genes : TreeFamUBAP2L
HOVERGENQ14157
HOGENOMQ14157
Homologs : HomoloGeneUBAP2L
Homology/Alignments : Family Browser (UCSC)UBAP2L
Gene fusions - Rearrangements
Fusion : MitelmanUBAP2L/EEFSEC [1q21.3/3q21.3]  
Fusion: TCGAUBAP2L 1q21.3 EEFSEC 3q21.3 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBAP2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBAP2L
dbVarUBAP2L
ClinVarUBAP2L
1000_GenomesUBAP2L 
Exome Variant ServerUBAP2L
ExAC (Exome Aggregation Consortium)UBAP2L (select the gene name)
Genetic variants : HAPMAP9898
Genomic Variants (DGV)UBAP2L [DGVbeta]
DECIPHERUBAP2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBAP2L 
Mutations
ICGC Data PortalUBAP2L 
TCGA Data PortalUBAP2L 
Broad Tumor PortalUBAP2L
OASIS PortalUBAP2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBAP2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBAP2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBAP2L
DgiDB (Drug Gene Interaction Database)UBAP2L
DoCM (Curated mutations)UBAP2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBAP2L (select a term)
intoGenUBAP2L
Cancer3DUBAP2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616472   
Orphanet
MedgenUBAP2L
Genetic Testing Registry UBAP2L
NextProtQ14157 [Medical]
TSGene9898
GENETestsUBAP2L
Target ValidationUBAP2L
Huge Navigator UBAP2L [HugePedia]
snp3D : Map Gene to Disease9898
BioCentury BCIQUBAP2L
ClinGenUBAP2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9898
Chemical/Pharm GKB GenePA134883839
Clinical trialUBAP2L
Miscellaneous
canSAR (ICR)UBAP2L (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBAP2L
EVEXUBAP2L
GoPubMedUBAP2L
iHOPUBAP2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:34 CEST 2017

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