Atlas of Genetics and Cytogenetics in Oncology and Haematology


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UBC (ubiquitin C)

Identity

Other aliasHMG20
HGNC (Hugo) UBC
LocusID (NCBI) 7316
Atlas_Id 42743
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 124911645 and ends at 124915041 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AD_1 () / UBC (12q24.31)APBB1 (11p15.4) / UBC (12q24.31)FHIT (3p14.2) / UBC (12q24.31)
HPCAL4 (1p34.2) / UBC (12q24.31)LOC100507412 (-) / UBC (12q24.31)METRNL (17q25.3) / UBC (12q24.31)
PPP4R3B (2p16.1) / UBC (12q24.31)RBM10 (Xp11.23) / UBC (12q24.31)RPL23A (17q11.2) / UBC (12q24.31)
SCARB1 (12q24.31) / UBC (12q24.31)TLE4 (9q21.31) / UBC (12q24.31)UBA52 (19p13.11) / UBC (12q24.31)
UBC (12q24.31) / GNA12 (7p22.3)UBC (12q24.31) / LMNA (1q22)UBC (12q24.31) / MYC (8q24.21)
UBC (12q24.31) / SLC23A2 (20p13)UBC (12q24.31) / UBA52 (19p13.11)UBC (12q24.31) / UBC (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBC   12468
Cards
Entrez_Gene (NCBI)UBC  7316  ubiquitin C
AliasesHMG20
GeneCards (Weizmann)UBC
Ensembl hg19 (Hinxton)ENSG00000150991 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150991 [Gene_View]  ENSG00000150991 [Sequence]  chr12:124911645-124915041 [Contig_View]  UBC [Vega]
ICGC DataPortalENSG00000150991
TCGA cBioPortalUBC
AceView (NCBI)UBC
Genatlas (Paris)UBC
WikiGenes7316
SOURCE (Princeton)UBC
Genetics Home Reference (NIH)UBC
Genomic and cartography
GoldenPath hg38 (UCSC)UBC  -     chr12:124911645-124915041 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBC  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblUBC - 12q24.31 [CytoView hg19]  UBC - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIUBC [Mapview hg19]  UBC [Mapview hg38]
OMIM191340   
Gene and transcription
Genbank (Entrez)AB009010 AB209782 AF052164 AK026846 AK056939
RefSeq transcript (Entrez)NM_021009
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBC
Cluster EST : UnigeneHs.731841 [ NCBI ]
CGAP (NCI)Hs.731841
Alternative Splicing GalleryENSG00000150991
Gene ExpressionUBC [ NCBI-GEO ]   UBC [ EBI - ARRAY_EXPRESS ]   UBC [ SEEK ]   UBC [ MEM ]
Gene Expression Viewer (FireBrowse)UBC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7316
GTEX Portal (Tissue expression)UBC
Human Protein AtlasENSG00000150991-UBC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG48
Splice isoforms : SwissVarP0CG48
PhosPhoSitePlusP0CG48
Domaine pattern : Prosite (Expaxy)UBIQUITIN_1 (PS00299)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin    Ubiquitin-like_domsf    Ubiquitin_CS    Ubiquitin_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)UBC
DMDM Disease mutations7316
Blocks (Seattle)UBC
PDB (SRS)1C3T    1CMX    1D3Z    1F9J    1FXT    1G6J    1GJZ    1NBF    1OGW    1Q5W    1S1Q    1SIF    1TBE    1UBI    1UBQ    1UD7    1XD3    1XQQ    1YX5    1YX6    1ZGU    1ZO6    2AYO    2BGF    2DEN    2FUH    2G45    2GBJ    2GBK    2GBM    2GBN    2GBR    2GMI    2HTH    2IBI    2J7Q    2JF5    2JRI    2JY6    2JZZ    2K25    2K6D    2K8B    2K8C    2KDF    2KHW    2KJH    2KLG    2KN5    2KX0    2L3Z    2LD9    2LVO    2LVP    2LVQ    2LZ6    2MBO    2MBQ    2MCN    2MI8    2MJ5    2MOR    2MRE    2MWS    2N2K    2NR2    2O6V    2OJR    2PE9    2PEA    2RR9    2RU6    2W9N    2WDT    2XEW    2Y5B    2Z59    2ZCB    2ZVN    2ZVO    3A33    3ALB    3AUL    3B08    3B0A    3BY4    3C0R    3DVG    3DVN    3EEC    3EFU    3EHV    3H7P    3H7S    3HM3    3I3T    3IFW    3IHP    3JSV    3JVZ    3JW0    3K9O    3K9P    3KVF    3KW5    3LDZ    3MHS    3MTN    3N30    3N32    3N3K    3NS8    3O65    3OFI    3OJ3    3OJ4    3ONS    3PRM    3PT2    3PTF    3Q3F    3RUL    3TMP    3U30    3UGB    3V6C    3V6E    3VFK    3VUW    3VUX    3VUY    3WXE    3WXF    3ZLZ    3ZNH    3ZNI    3ZNZ    4AP4    4AUQ    4BOS    4BOZ    4BVU    4DDG    4DDI    4DHJ    4DHZ    4FJV    4HK2    4HXD    4I6L    4I6N    4IG7    4IUM    4JQW    4K1R    4K7S    4K7U    4K7W    4KSK    4KSL    4LCD    4LDT    4MDK    4MM3    4MSM    4MSQ    4NQK    4UN2    4V3K    4V3L    4WZP    4XOK    4XOL    4ZQS    5A5B    5AF4    5AF5    5AF6    5AIT    5AIU    5B83    5C7J    5C7M    5E6J    5H07    5NL4    5NLF    5NLI    5NMC    5OE7    5OHV    5OXH    5OXI    5UDH    5WQ4    6EQI   
PDB (PDBSum)1C3T    1CMX    1D3Z    1F9J    1FXT    1G6J    1GJZ    1NBF    1OGW    1Q5W    1S1Q    1SIF    1TBE    1UBI    1UBQ    1UD7    1XD3    1XQQ    1YX5    1YX6    1ZGU    1ZO6    2AYO    2BGF    2DEN    2FUH    2G45    2GBJ    2GBK    2GBM    2GBN    2GBR    2GMI    2HTH    2IBI    2J7Q    2JF5    2JRI    2JY6    2JZZ    2K25    2K6D    2K8B    2K8C    2KDF    2KHW    2KJH    2KLG    2KN5    2KX0    2L3Z    2LD9    2LVO    2LVP    2LVQ    2LZ6    2MBO    2MBQ    2MCN    2MI8    2MJ5    2MOR    2MRE    2MWS    2N2K    2NR2    2O6V    2OJR    2PE9    2PEA    2RR9    2RU6    2W9N    2WDT    2XEW    2Y5B    2Z59    2ZCB    2ZVN    2ZVO    3A33    3ALB    3AUL    3B08    3B0A    3BY4    3C0R    3DVG    3DVN    3EEC    3EFU    3EHV    3H7P    3H7S    3HM3    3I3T    3IFW    3IHP    3JSV    3JVZ    3JW0    3K9O    3K9P    3KVF    3KW5    3LDZ    3MHS    3MTN    3N30    3N32    3N3K    3NS8    3O65    3OFI    3OJ3    3OJ4    3ONS    3PRM    3PT2    3PTF    3Q3F    3RUL    3TMP    3U30    3UGB    3V6C    3V6E    3VFK    3VUW    3VUX    3VUY    3WXE    3WXF    3ZLZ    3ZNH    3ZNI    3ZNZ    4AP4    4AUQ    4BOS    4BOZ    4BVU    4DDG    4DDI    4DHJ    4DHZ    4FJV    4HK2    4HXD    4I6L    4I6N    4IG7    4IUM    4JQW    4K1R    4K7S    4K7U    4K7W    4KSK    4KSL    4LCD    4LDT    4MDK    4MM3    4MSM    4MSQ    4NQK    4UN2    4V3K    4V3L    4WZP    4XOK    4XOL    4ZQS    5A5B    5AF4    5AF5    5AF6    5AIT    5AIU    5B83    5C7J    5C7M    5E6J    5H07    5NL4    5NLF    5NLI    5NMC    5OE7    5OHV    5OXH    5OXI    5UDH    5WQ4    6EQI   
PDB (IMB)1C3T    1CMX    1D3Z    1F9J    1FXT    1G6J    1GJZ    1NBF    1OGW    1Q5W    1S1Q    1SIF    1TBE    1UBI    1UBQ    1UD7    1XD3    1XQQ    1YX5    1YX6    1ZGU    1ZO6    2AYO    2BGF    2DEN    2FUH    2G45    2GBJ    2GBK    2GBM    2GBN    2GBR    2GMI    2HTH    2IBI    2J7Q    2JF5    2JRI    2JY6    2JZZ    2K25    2K6D    2K8B    2K8C    2KDF    2KHW    2KJH    2KLG    2KN5    2KX0    2L3Z    2LD9    2LVO    2LVP    2LVQ    2LZ6    2MBO    2MBQ    2MCN    2MI8    2MJ5    2MOR    2MRE    2MWS    2N2K    2NR2    2O6V    2OJR    2PE9    2PEA    2RR9    2RU6    2W9N    2WDT    2XEW    2Y5B    2Z59    2ZCB    2ZVN    2ZVO    3A33    3ALB    3AUL    3B08    3B0A    3BY4    3C0R    3DVG    3DVN    3EEC    3EFU    3EHV    3H7P    3H7S    3HM3    3I3T    3IFW    3IHP    3JSV    3JVZ    3JW0    3K9O    3K9P    3KVF    3KW5    3LDZ    3MHS    3MTN    3N30    3N32    3N3K    3NS8    3O65    3OFI    3OJ3    3OJ4    3ONS    3PRM    3PT2    3PTF    3Q3F    3RUL    3TMP    3U30    3UGB    3V6C    3V6E    3VFK    3VUW    3VUX    3VUY    3WXE    3WXF    3ZLZ    3ZNH    3ZNI    3ZNZ    4AP4    4AUQ    4BOS    4BOZ    4BVU    4DDG    4DDI    4DHJ    4DHZ    4FJV    4HK2    4HXD    4I6L    4I6N    4IG7    4IUM    4JQW    4K1R    4K7S    4K7U    4K7W    4KSK    4KSL    4LCD    4LDT    4MDK    4MM3    4MSM    4MSQ    4NQK    4UN2    4V3K    4V3L    4WZP    4XOK    4XOL    4ZQS    5A5B    5AF4    5AF5    5AF6    5AIT    5AIU    5B83    5C7J    5C7M    5E6J    5H07    5NL4    5NLF    5NLI    5NMC    5OE7    5OHV    5OXH    5OXI    5UDH    5WQ4    6EQI   
PDB (RSDB)1C3T    1CMX    1D3Z    1F9J    1FXT    1G6J    1GJZ    1NBF    1OGW    1Q5W    1S1Q    1SIF    1TBE    1UBI    1UBQ    1UD7    1XD3    1XQQ    1YX5    1YX6    1ZGU    1ZO6    2AYO    2BGF    2DEN    2FUH    2G45    2GBJ    2GBK    2GBM    2GBN    2GBR    2GMI    2HTH    2IBI    2J7Q    2JF5    2JRI    2JY6    2JZZ    2K25    2K6D    2K8B    2K8C    2KDF    2KHW    2KJH    2KLG    2KN5    2KX0    2L3Z    2LD9    2LVO    2LVP    2LVQ    2LZ6    2MBO    2MBQ    2MCN    2MI8    2MJ5    2MOR    2MRE    2MWS    2N2K    2NR2    2O6V    2OJR    2PE9    2PEA    2RR9    2RU6    2W9N    2WDT    2XEW    2Y5B    2Z59    2ZCB    2ZVN    2ZVO    3A33    3ALB    3AUL    3B08    3B0A    3BY4    3C0R    3DVG    3DVN    3EEC    3EFU    3EHV    3H7P    3H7S    3HM3    3I3T    3IFW    3IHP    3JSV    3JVZ    3JW0    3K9O    3K9P    3KVF    3KW5    3LDZ    3MHS    3MTN    3N30    3N32    3N3K    3NS8    3O65    3OFI    3OJ3    3OJ4    3ONS    3PRM    3PT2    3PTF    3Q3F    3RUL    3TMP    3U30    3UGB    3V6C    3V6E    3VFK    3VUW    3VUX    3VUY    3WXE    3WXF    3ZLZ    3ZNH    3ZNI    3ZNZ    4AP4    4AUQ    4BOS    4BOZ    4BVU    4DDG    4DDI    4DHJ    4DHZ    4FJV    4HK2    4HXD    4I6L    4I6N    4IG7    4IUM    4JQW    4K1R    4K7S    4K7U    4K7W    4KSK    4KSL    4LCD    4LDT    4MDK    4MM3    4MSM    4MSQ    4NQK    4UN2    4V3K    4V3L    4WZP    4XOK    4XOL    4ZQS    5A5B    5AF4    5AF5    5AF6    5AIT    5AIU    5B83    5C7J    5C7M    5E6J    5H07    5NL4    5NLF    5NLI    5NMC    5OE7    5OHV    5OXH    5OXI    5UDH    5WQ4    6EQI   
Structural Biology KnowledgeBase1C3T    1CMX    1D3Z    1F9J    1FXT    1G6J    1GJZ    1NBF    1OGW    1Q5W    1S1Q    1SIF    1TBE    1UBI    1UBQ    1UD7    1XD3    1XQQ    1YX5    1YX6    1ZGU    1ZO6    2AYO    2BGF    2DEN    2FUH    2G45    2GBJ    2GBK    2GBM    2GBN    2GBR    2GMI    2HTH    2IBI    2J7Q    2JF5    2JRI    2JY6    2JZZ    2K25    2K6D    2K8B    2K8C    2KDF    2KHW    2KJH    2KLG    2KN5    2KX0    2L3Z    2LD9    2LVO    2LVP    2LVQ    2LZ6    2MBO    2MBQ    2MCN    2MI8    2MJ5    2MOR    2MRE    2MWS    2N2K    2NR2    2O6V    2OJR    2PE9    2PEA    2RR9    2RU6    2W9N    2WDT    2XEW    2Y5B    2Z59    2ZCB    2ZVN    2ZVO    3A33    3ALB    3AUL    3B08    3B0A    3BY4    3C0R    3DVG    3DVN    3EEC    3EFU    3EHV    3H7P    3H7S    3HM3    3I3T    3IFW    3IHP    3JSV    3JVZ    3JW0    3K9O    3K9P    3KVF    3KW5    3LDZ    3MHS    3MTN    3N30    3N32    3N3K    3NS8    3O65    3OFI    3OJ3    3OJ4    3ONS    3PRM    3PT2    3PTF    3Q3F    3RUL    3TMP    3U30    3UGB    3V6C    3V6E    3VFK    3VUW    3VUX    3VUY    3WXE    3WXF    3ZLZ    3ZNH    3ZNI    3ZNZ    4AP4    4AUQ    4BOS    4BOZ    4BVU    4DDG    4DDI    4DHJ    4DHZ    4FJV    4HK2    4HXD    4I6L    4I6N    4IG7    4IUM    4JQW    4K1R    4K7S    4K7U    4K7W    4KSK    4KSL    4LCD    4LDT    4MDK    4MM3    4MSM    4MSQ    4NQK    4UN2    4V3K    4V3L    4WZP    4XOK    4XOL    4ZQS    5A5B    5AF4    5AF5    5AF6    5AIT    5AIU    5B83    5C7J    5C7M    5E6J    5H07    5NL4    5NLF    5NLI    5NMC    5OE7    5OHV    5OXH    5OXI    5UDH    5WQ4    6EQI   
SCOP (Structural Classification of Proteins)1C3T    1CMX    1D3Z    1F9J    1FXT    1G6J    1GJZ    1NBF    1OGW    1Q5W    1S1Q    1SIF    1TBE    1UBI    1UBQ    1UD7    1XD3    1XQQ    1YX5    1YX6    1ZGU    1ZO6    2AYO    2BGF    2DEN    2FUH    2G45    2GBJ    2GBK    2GBM    2GBN    2GBR    2GMI    2HTH    2IBI    2J7Q    2JF5    2JRI    2JY6    2JZZ    2K25    2K6D    2K8B    2K8C    2KDF    2KHW    2KJH    2KLG    2KN5    2KX0    2L3Z    2LD9    2LVO    2LVP    2LVQ    2LZ6    2MBO    2MBQ    2MCN    2MI8    2MJ5    2MOR    2MRE    2MWS    2N2K    2NR2    2O6V    2OJR    2PE9    2PEA    2RR9    2RU6    2W9N    2WDT    2XEW    2Y5B    2Z59    2ZCB    2ZVN    2ZVO    3A33    3ALB    3AUL    3B08    3B0A    3BY4    3C0R    3DVG    3DVN    3EEC    3EFU    3EHV    3H7P    3H7S    3HM3    3I3T    3IFW    3IHP    3JSV    3JVZ    3JW0    3K9O    3K9P    3KVF    3KW5    3LDZ    3MHS    3MTN    3N30    3N32    3N3K    3NS8    3O65    3OFI    3OJ3    3OJ4    3ONS    3PRM    3PT2    3PTF    3Q3F    3RUL    3TMP    3U30    3UGB    3V6C    3V6E    3VFK    3VUW    3VUX    3VUY    3WXE    3WXF    3ZLZ    3ZNH    3ZNI    3ZNZ    4AP4    4AUQ    4BOS    4BOZ    4BVU    4DDG    4DDI    4DHJ    4DHZ    4FJV    4HK2    4HXD    4I6L    4I6N    4IG7    4IUM    4JQW    4K1R    4K7S    4K7U    4K7W    4KSK    4KSL    4LCD    4LDT    4MDK    4MM3    4MSM    4MSQ    4NQK    4UN2    4V3K    4V3L    4WZP    4XOK    4XOL    4ZQS    5A5B    5AF4    5AF5    5AF6    5AIT    5AIU    5B83    5C7J    5C7M    5E6J    5H07    5NL4    5NLF    5NLI    5NMC    5OE7    5OHV    5OXH    5OXI    5UDH    5WQ4    6EQI   
CATH (Classification of proteins structures)1C3T    1CMX    1D3Z    1F9J    1FXT    1G6J    1GJZ    1NBF    1OGW    1Q5W    1S1Q    1SIF    1TBE    1UBI    1UBQ    1UD7    1XD3    1XQQ    1YX5    1YX6    1ZGU    1ZO6    2AYO    2BGF    2DEN    2FUH    2G45    2GBJ    2GBK    2GBM    2GBN    2GBR    2GMI    2HTH    2IBI    2J7Q    2JF5    2JRI    2JY6    2JZZ    2K25    2K6D    2K8B    2K8C    2KDF    2KHW    2KJH    2KLG    2KN5    2KX0    2L3Z    2LD9    2LVO    2LVP    2LVQ    2LZ6    2MBO    2MBQ    2MCN    2MI8    2MJ5    2MOR    2MRE    2MWS    2N2K    2NR2    2O6V    2OJR    2PE9    2PEA    2RR9    2RU6    2W9N    2WDT    2XEW    2Y5B    2Z59    2ZCB    2ZVN    2ZVO    3A33    3ALB    3AUL    3B08    3B0A    3BY4    3C0R    3DVG    3DVN    3EEC    3EFU    3EHV    3H7P    3H7S    3HM3    3I3T    3IFW    3IHP    3JSV    3JVZ    3JW0    3K9O    3K9P    3KVF    3KW5    3LDZ    3MHS    3MTN    3N30    3N32    3N3K    3NS8    3O65    3OFI    3OJ3    3OJ4    3ONS    3PRM    3PT2    3PTF    3Q3F    3RUL    3TMP    3U30    3UGB    3V6C    3V6E    3VFK    3VUW    3VUX    3VUY    3WXE    3WXF    3ZLZ    3ZNH    3ZNI    3ZNZ    4AP4    4AUQ    4BOS    4BOZ    4BVU    4DDG    4DDI    4DHJ    4DHZ    4FJV    4HK2    4HXD    4I6L    4I6N    4IG7    4IUM    4JQW    4K1R    4K7S    4K7U    4K7W    4KSK    4KSL    4LCD    4LDT    4MDK    4MM3    4MSM    4MSQ    4NQK    4UN2    4V3K    4V3L    4WZP    4XOK    4XOL    4ZQS    5A5B    5AF4    5AF5    5AF6    5AIT    5AIU    5B83    5C7J    5C7M    5E6J    5H07    5NL4    5NLF    5NLI    5NMC    5OE7    5OHV    5OXH    5OXI    5UDH    5WQ4    6EQI   
SuperfamilyP0CG48
Human Protein Atlas [tissue]ENSG00000150991-UBC [tissue]
Peptide AtlasP0CG48
HPRD07038
IPIIPI00969566   IPI00784990   IPI01011412   IPI00793729   IPI01010447   IPI01015749   IPI01010419   IPI01015985   IPI01009501   IPI01015113   IPI01015565   IPI01014205   IPI01014596   IPI01018966   IPI01015016   
Protein Interaction databases
DIP (DOE-UCLA)P0CG48
IntAct (EBI)P0CG48
FunCoupENSG00000150991
BioGRIDUBC
STRING (EMBL)UBC
ZODIACUBC
Ontologies - Pathways
QuickGOP0CG48
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  activation of MAPK activity  protein polyubiquitination  nucleotide-excision repair, DNA damage recognition  protease binding  MyD88-dependent toll-like receptor signaling pathway  RNA binding  protein binding  extracellular space  nucleus  nucleus  nucleoplasm  cytoplasm  mitochondrial outer membrane  endoplasmic reticulum membrane  cytosol  plasma membrane  transcription-coupled nucleotide-excision repair  nucleotide-excision repair, preincision complex assembly  nucleotide-excision repair, DNA incision, 5'-to lesion  nucleotide-excision repair, DNA gap filling  protein targeting to peroxisome  transforming growth factor beta receptor signaling pathway  I-kappaB kinase/NF-kappaB signaling  JNK cascade  endosome membrane  Wnt signaling pathway  endosomal transport  protein ubiquitination  protein ubiquitination  protein deubiquitination  viral life cycle  virion assembly  cytokine-mediated signaling pathway  modification-dependent protein catabolic process  translesion synthesis  negative regulation of transforming growth factor beta receptor signaling pathway  endocytic vesicle membrane  anaphase-promoting complex-dependent catabolic process  protein tag  ubiquitin protein ligase binding  vesicle  nucleotide-excision repair, DNA incision  TRIF-dependent toll-like receptor signaling pathway  interstrand cross-link repair  error-prone translesion synthesis  DNA damage response, detection of DNA damage  positive regulation of apoptotic process  negative regulation of apoptotic process  myelin sheath  regulation of mRNA stability  host cell  cellular protein metabolic process  positive regulation of transcription by RNA polymerase II  positive regulation of NF-kappaB transcription factor activity  stress-activated MAPK cascade  transmembrane transport  membrane organization  regulation of transcription from RNA polymerase II promoter in response to hypoxia  extracellular exosome  nucleotide-binding oligomerization domain containing signaling pathway  interleukin-1-mediated signaling pathway  global genome nucleotide-excision repair  error-free translesion synthesis  intracellular transport of virus  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  activation of MAPK activity  protein polyubiquitination  nucleotide-excision repair, DNA damage recognition  protease binding  MyD88-dependent toll-like receptor signaling pathway  RNA binding  protein binding  extracellular space  nucleus  nucleus  nucleoplasm  cytoplasm  mitochondrial outer membrane  endoplasmic reticulum membrane  cytosol  plasma membrane  transcription-coupled nucleotide-excision repair  nucleotide-excision repair, preincision complex assembly  nucleotide-excision repair, DNA incision, 5'-to lesion  nucleotide-excision repair, DNA gap filling  protein targeting to peroxisome  transforming growth factor beta receptor signaling pathway  I-kappaB kinase/NF-kappaB signaling  JNK cascade  endosome membrane  Wnt signaling pathway  endosomal transport  protein ubiquitination  protein ubiquitination  protein deubiquitination  viral life cycle  virion assembly  cytokine-mediated signaling pathway  modification-dependent protein catabolic process  translesion synthesis  negative regulation of transforming growth factor beta receptor signaling pathway  endocytic vesicle membrane  anaphase-promoting complex-dependent catabolic process  protein tag  ubiquitin protein ligase binding  vesicle  nucleotide-excision repair, DNA incision  TRIF-dependent toll-like receptor signaling pathway  interstrand cross-link repair  error-prone translesion synthesis  DNA damage response, detection of DNA damage  positive regulation of apoptotic process  negative regulation of apoptotic process  myelin sheath  regulation of mRNA stability  host cell  cellular protein metabolic process  positive regulation of transcription by RNA polymerase II  positive regulation of NF-kappaB transcription factor activity  stress-activated MAPK cascade  transmembrane transport  membrane organization  regulation of transcription from RNA polymerase II promoter in response to hypoxia  extracellular exosome  nucleotide-binding oligomerization domain containing signaling pathway  interleukin-1-mediated signaling pathway  global genome nucleotide-excision repair  error-free translesion synthesis  intracellular transport of virus  
Pathways : KEGGPPAR signaling pathway   
NDEx NetworkUBC
Atlas of Cancer Signalling NetworkUBC
Wikipedia pathwaysUBC
Orthology - Evolution
OrthoDB7316
GeneTree (enSembl)ENSG00000150991
Phylogenetic Trees/Animal Genes : TreeFamUBC
HOVERGENP0CG48
HOGENOMP0CG48
Homologs : HomoloGeneUBC
Homology/Alignments : Family Browser (UCSC)UBC
Gene fusions - Rearrangements
Fusion Cancer (Beijing)AD_1 [UBC]  -  12q24.31 [FUSC002932]
Fusion Cancer (Beijing)UBC [12q24.31]  -  UBA52 [19p13.11]  [FUSC001331]  [FUSC001331]  [FUSC001331]
Fusion : QuiverUBC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBC
dbVarUBC
ClinVarUBC
1000_GenomesUBC 
Exome Variant ServerUBC
ExAC (Exome Aggregation Consortium)ENSG00000150991
GNOMAD BrowserENSG00000150991
Varsome BrowserUBC
Genetic variants : HAPMAP7316
Genomic Variants (DGV)UBC [DGVbeta]
DECIPHERUBC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBC 
Mutations
ICGC Data PortalUBC 
TCGA Data PortalUBC 
Broad Tumor PortalUBC
OASIS PortalUBC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBC
DgiDB (Drug Gene Interaction Database)UBC
DoCM (Curated mutations)UBC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBC (select a term)
intoGenUBC
Cancer3DUBC(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM191340   
Orphanet
DisGeNETUBC
MedgenUBC
Genetic Testing Registry UBC
NextProtP0CG48 [Medical]
TSGene7316
GENETestsUBC
Target ValidationUBC
Huge Navigator UBC [HugePedia]
snp3D : Map Gene to Disease7316
BioCentury BCIQUBC
ClinGenUBC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7316
Chemical/Pharm GKB GenePA37118
Clinical trialUBC
Miscellaneous
canSAR (ICR)UBC (select the gene name)
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBC
EVEXUBC
GoPubMedUBC
iHOPUBC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:47:58 CET 2018

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