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UBE2DNL (ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene))

Identity

Alias_namesubiquitin-conjugating enzyme E2D N-terminal like
ubiquitin-conjugating enzyme E2D N-terminal like pseudogene
ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene)
Alias_symbol (synonym)MGC42638
Other alias-
HGNC (Hugo) UBE2DNL
LocusID (NCBI) 100131816
Atlas_Id 75414
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 84934151 and ends at 84934890 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBE2DNL   28656
Cards
Entrez_Gene (NCBI)UBE2DNL  100131816  ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene)
Aliases
GeneCards (Weizmann)UBE2DNL
Ensembl hg19 (Hinxton)ENSG00000229547 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229547 [Gene_View]  chrX:84934151-84934890 [Contig_View]  UBE2DNL [Vega]
ICGC DataPortalENSG00000229547
TCGA cBioPortalUBE2DNL
AceView (NCBI)UBE2DNL
Genatlas (Paris)UBE2DNL
WikiGenes100131816
SOURCE (Princeton)UBE2DNL
Genetics Home Reference (NIH)UBE2DNL
Genomic and cartography
GoldenPath hg38 (UCSC)UBE2DNL  -     chrX:84934151-84934890 +  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBE2DNL  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblUBE2DNL - Xq21.1 [CytoView hg19]  UBE2DNL - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIUBE2DNL [Mapview hg19]  UBE2DNL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040290
RefSeq transcript (Entrez)NM_178567
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBE2DNL
Cluster EST : UnigeneHs.460809 [ NCBI ]
CGAP (NCI)Hs.460809
Alternative Splicing GalleryENSG00000229547
Gene ExpressionUBE2DNL [ NCBI-GEO ]   UBE2DNL [ EBI - ARRAY_EXPRESS ]   UBE2DNL [ SEEK ]   UBE2DNL [ MEM ]
Gene Expression Viewer (FireBrowse)UBE2DNL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131816
GTEX Portal (Tissue expression)UBE2DNL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWF7
Splice isoforms : SwissVarQ8IWF7
PhosPhoSitePlusQ8IWF7
Domaine pattern : Prosite (Expaxy)UBIQUITIN_CONJUGAT_2 (PS50127)   
Domains : Interpro (EBI)UBQ-conjugat_E2    UBQ-conjugating_enzyme/RWD   
Domain families : Pfam (Sanger)UQ_con (PF00179)   
Domain families : Pfam (NCBI)pfam00179   
Conserved Domain (NCBI)UBE2DNL
DMDM Disease mutations100131816
Blocks (Seattle)UBE2DNL
SuperfamilyQ8IWF7
Human Protein AtlasENSG00000229547
Peptide AtlasQ8IWF7
IPIIPI00217288   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWF7
IntAct (EBI)Q8IWF7
FunCoupENSG00000229547
BioGRIDUBE2DNL
STRING (EMBL)UBE2DNL
ZODIACUBE2DNL
Ontologies - Pathways
QuickGOQ8IWF7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkUBE2DNL
Atlas of Cancer Signalling NetworkUBE2DNL
Wikipedia pathwaysUBE2DNL
Orthology - Evolution
OrthoDB100131816
GeneTree (enSembl)ENSG00000229547
Phylogenetic Trees/Animal Genes : TreeFamUBE2DNL
HOVERGENQ8IWF7
HOGENOMQ8IWF7
Homologs : HomoloGeneUBE2DNL
Homology/Alignments : Family Browser (UCSC)UBE2DNL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBE2DNL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBE2DNL
dbVarUBE2DNL
ClinVarUBE2DNL
1000_GenomesUBE2DNL 
Exome Variant ServerUBE2DNL
ExAC (Exome Aggregation Consortium)UBE2DNL (select the gene name)
Genetic variants : HAPMAP100131816
Genomic Variants (DGV)UBE2DNL [DGVbeta]
DECIPHERUBE2DNL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBE2DNL 
Mutations
ICGC Data PortalUBE2DNL 
TCGA Data PortalUBE2DNL 
Broad Tumor PortalUBE2DNL
OASIS PortalUBE2DNL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUBE2DNL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBE2DNL
DgiDB (Drug Gene Interaction Database)UBE2DNL
DoCM (Curated mutations)UBE2DNL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBE2DNL (select a term)
intoGenUBE2DNL
Cancer3DUBE2DNL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUBE2DNL
Genetic Testing Registry UBE2DNL
NextProtQ8IWF7 [Medical]
TSGene100131816
GENETestsUBE2DNL
Target ValidationUBE2DNL
Huge Navigator UBE2DNL [HugePedia]
snp3D : Map Gene to Disease100131816
BioCentury BCIQUBE2DNL
ClinGenUBE2DNL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131816
Clinical trialUBE2DNL
Miscellaneous
canSAR (ICR)UBE2DNL (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBE2DNL
EVEXUBE2DNL
GoPubMedUBE2DNL
iHOPUBE2DNL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:07 CEST 2017

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