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UBE2F (ubiquitin conjugating enzyme E2 F (putative))

Identity

Alias (NCBI)NCE2
HGNC (Hugo) UBE2F
HGNC Alias symbNCE2
HGNC Alias nameNEDD8 conjugating enzyme
HGNC Previous nameubiquitin-conjugating enzyme E2F (putative)
LocusID (NCBI) 140739
Atlas_Id 47077
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 237966945 and ends at 238042782 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGAP1 (2q37.2) / UBE2F (2q37.3)NGFRAP1 () / UBE2F (2q37.3)UBE2F (2q37.3) / C20orf194 (20p13)
AGAP1 2q37.2 / UBE2F 2q37.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UBE2F   12480
Cards
Entrez_Gene (NCBI)UBE2F    ubiquitin conjugating enzyme E2 F (putative)
AliasesNCE2
GeneCards (Weizmann)UBE2F
Ensembl hg19 (Hinxton)ENSG00000184182 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184182 [Gene_View]  ENSG00000184182 [Sequence]  chr2:237966945-238042782 [Contig_View]  UBE2F [Vega]
ICGC DataPortalENSG00000184182
TCGA cBioPortalUBE2F
AceView (NCBI)UBE2F
Genatlas (Paris)UBE2F
SOURCE (Princeton)UBE2F
Genetics Home Reference (NIH)UBE2F
Genomic and cartography
GoldenPath hg38 (UCSC)UBE2F  -     chr2:237966945-238042782 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBE2F  -     2q37.3   [Description]    (hg19-Feb_2009)
GoldenPathUBE2F - 2q37.3 [CytoView hg19]  UBE2F - 2q37.3 [CytoView hg38]
ImmunoBaseENSG00000184182
Genome Data Viewer NCBIUBE2F [Mapview hg19]  
OMIM617700   
Gene and transcription
Genbank (Entrez)AF310723 AK290063 AK293334 AK294107 AK297502
RefSeq transcript (Entrez)NM_001278305 NM_001278306 NM_001278307 NM_001278308 NM_080678
Consensus coding sequences : CCDS (NCBI)UBE2F
Gene ExpressionUBE2F [ NCBI-GEO ]   UBE2F [ EBI - ARRAY_EXPRESS ]   UBE2F [ SEEK ]   UBE2F [ MEM ]
Gene Expression Viewer (FireBrowse)UBE2F [ Firebrowse - Broad ]
GenevisibleExpression of UBE2F in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140739
GTEX Portal (Tissue expression)UBE2F
Human Protein AtlasENSG00000184182-UBE2F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969M7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969M7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969M7
PhosPhoSitePlusQ969M7
Domaine pattern : Prosite (Expaxy)UBC_1 (PS00183)    UBC_2 (PS50127)   
Domains : Interpro (EBI)UBQ-conjugat_E2    UBQ-conjugating_AS    UBQ-conjugating_enzyme/RWD   
Domain families : Pfam (Sanger)UQ_con (PF00179)   
Domain families : Pfam (NCBI)pfam00179   
Conserved Domain (NCBI)UBE2F
PDB (RSDB)2EDI    3FN1    4GBA   
PDB Europe2EDI    3FN1    4GBA   
PDB (PDBSum)2EDI    3FN1    4GBA   
PDB (IMB)2EDI    3FN1    4GBA   
Structural Biology KnowledgeBase2EDI    3FN1    4GBA   
SCOP (Structural Classification of Proteins)2EDI    3FN1    4GBA   
CATH (Classification of proteins structures)2EDI    3FN1    4GBA   
SuperfamilyQ969M7
AlphaFold pdb e-kbQ969M7   
Human Protein Atlas [tissue]ENSG00000184182-UBE2F [tissue]
HPRD14812
Protein Interaction databases
DIP (DOE-UCLA)Q969M7
IntAct (EBI)Q969M7
BioGRIDUBE2F
STRING (EMBL)UBE2F
ZODIACUBE2F
Ontologies - Pathways
QuickGOQ969M7
Ontology : AmiGOprotein binding  ATP binding  nucleus  cytosol  NEDD8 transferase activity  post-translational protein modification  protein neddylation  protein neddylation  protein neddylation  NEDD8 conjugating enzyme activity  
Ontology : EGO-EBIprotein binding  ATP binding  nucleus  cytosol  NEDD8 transferase activity  post-translational protein modification  protein neddylation  protein neddylation  protein neddylation  NEDD8 conjugating enzyme activity  
Pathways : BIOCARTARole of Parkin in the Ubiquitin-Proteasomal Pathway [Genes]   
Pathways : KEGGUbiquitin mediated proteolysis   
NDEx NetworkUBE2F
Atlas of Cancer Signalling NetworkUBE2F
Wikipedia pathwaysUBE2F
Orthology - Evolution
OrthoDB140739
GeneTree (enSembl)ENSG00000184182
Phylogenetic Trees/Animal Genes : TreeFamUBE2F
Homologs : HomoloGeneUBE2F
Homology/Alignments : Family Browser (UCSC)UBE2F
Gene fusions - Rearrangements
Fusion : MitelmanAGAP1/UBE2F [2q37.2/2q37.3]  
Fusion : QuiverUBE2F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBE2F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBE2F
dbVarUBE2F
ClinVarUBE2F
MonarchUBE2F
1000_GenomesUBE2F 
Exome Variant ServerUBE2F
GNOMAD BrowserENSG00000184182
Varsome BrowserUBE2F
ACMGUBE2F variants
VarityQ969M7
Genomic Variants (DGV)UBE2F [DGVbeta]
DECIPHERUBE2F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBE2F 
Mutations
ICGC Data PortalUBE2F 
TCGA Data PortalUBE2F 
Broad Tumor PortalUBE2F
OASIS PortalUBE2F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBE2F  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUBE2F
Mutations and Diseases : HGMDUBE2F
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUBE2F
DgiDB (Drug Gene Interaction Database)UBE2F
DoCM (Curated mutations)UBE2F
CIViC (Clinical Interpretations of Variants in Cancer)UBE2F
Cancer3DUBE2F
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617700   
Orphanet
DisGeNETUBE2F
MedgenUBE2F
Genetic Testing Registry UBE2F
NextProtQ969M7 [Medical]
GENETestsUBE2F
Target ValidationUBE2F
Huge Navigator UBE2F [HugePedia]
ClinGenUBE2F
Clinical trials, drugs, therapy
MyCancerGenomeUBE2F
Protein Interactions : CTDUBE2F
Pharm GKB GenePA37130
PharosQ969M7
Clinical trialUBE2F
Miscellaneous
canSAR (ICR)UBE2F
HarmonizomeUBE2F
DataMed IndexUBE2F
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUBE2F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:07 CEST 2021

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