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UBE2NL (ubiquitin conjugating enzyme E2 N like (gene/pseudogene))

Identity

Alias_namesubiquitin-conjugating enzyme E2N-like
ubiquitin-conjugating enzyme E2N-like (gene/pseudogene)
Other aliasLi174
HGNC (Hugo) UBE2NL
LocusID (NCBI) 389898
Atlas_Id 47198
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 142967173 and ends at 142968357 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBE2NL   31710
Cards
Entrez_Gene (NCBI)UBE2NL  389898  ubiquitin conjugating enzyme E2 N like (gene/pseudogene)
AliasesLi174
GeneCards (Weizmann)UBE2NL
Ensembl hg19 (Hinxton)ENSG00000276380 [Gene_View]  chrX:142967173-142968357 [Contig_View]  UBE2NL [Vega]
Ensembl hg38 (Hinxton)ENSG00000276380 [Gene_View]  chrX:142967173-142968357 [Contig_View]  UBE2NL [Vega]
ICGC DataPortalENSG00000276380
TCGA cBioPortalUBE2NL
AceView (NCBI)UBE2NL
Genatlas (Paris)UBE2NL
WikiGenes389898
SOURCE (Princeton)UBE2NL
Genetics Home Reference (NIH)UBE2NL
Genomic and cartography
GoldenPath hg19 (UCSC)UBE2NL  -     chrX:142967173-142968357 +  Xq27.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UBE2NL  -     Xq27.3   [Description]    (hg38-Dec_2013)
EnsemblUBE2NL - Xq27.3 [CytoView hg19]  UBE2NL - Xq27.3 [CytoView hg38]
Mapping of homologs : NCBIUBE2NL [Mapview hg19]  UBE2NL [Mapview hg38]
Gene and transcription
Genbank (Entrez)GU727624
RefSeq transcript (Entrez)NM_001012989
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016268 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)UBE2NL
Cluster EST : UnigeneHs.585177 [ NCBI ]
CGAP (NCI)Hs.585177
Alternative Splicing GalleryENSG00000276380
Gene ExpressionUBE2NL [ NCBI-GEO ]   UBE2NL [ EBI - ARRAY_EXPRESS ]   UBE2NL [ SEEK ]   UBE2NL [ MEM ]
Gene Expression Viewer (FireBrowse)UBE2NL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389898
GTEX Portal (Tissue expression)UBE2NL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JXB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JXB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JXB2
Splice isoforms : SwissVarQ5JXB2
PhosPhoSitePlusQ5JXB2
Domaine pattern : Prosite (Expaxy)UBIQUITIN_CONJUGAT_2 (PS50127)   
Domains : Interpro (EBI)UBQ-conjugat_E2    UBQ-conjugating_enzyme/RWD   
Domain families : Pfam (Sanger)UQ_con (PF00179)   
Domain families : Pfam (NCBI)pfam00179   
Conserved Domain (NCBI)UBE2NL
DMDM Disease mutations389898
Blocks (Seattle)UBE2NL
SuperfamilyQ5JXB2
Human Protein AtlasENSG00000276380
Peptide AtlasQ5JXB2
HPRD18504
IPIIPI00376844   
Protein Interaction databases
DIP (DOE-UCLA)Q5JXB2
IntAct (EBI)Q5JXB2
FunCoupENSG00000276380
BioGRIDUBE2NL
STRING (EMBL)UBE2NL
ZODIACUBE2NL
Ontologies - Pathways
QuickGOQ5JXB2
Ontology : AmiGOnucleus  cytoplasm  postreplication repair  ubiquitin protein ligase binding  ubiquitin protein ligase activity  extracellular exosome  protein K63-linked ubiquitination  
Ontology : EGO-EBInucleus  cytoplasm  postreplication repair  ubiquitin protein ligase binding  ubiquitin protein ligase activity  extracellular exosome  protein K63-linked ubiquitination  
Pathways : KEGGUbiquitin mediated proteolysis   
NDEx NetworkUBE2NL
Atlas of Cancer Signalling NetworkUBE2NL
Wikipedia pathwaysUBE2NL
Orthology - Evolution
OrthoDB389898
GeneTree (enSembl)ENSG00000276380
Phylogenetic Trees/Animal Genes : TreeFamUBE2NL
HOVERGENQ5JXB2
HOGENOMQ5JXB2
Homologs : HomoloGeneUBE2NL
Homology/Alignments : Family Browser (UCSC)UBE2NL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBE2NL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBE2NL
dbVarUBE2NL
ClinVarUBE2NL
1000_GenomesUBE2NL 
Exome Variant ServerUBE2NL
ExAC (Exome Aggregation Consortium)UBE2NL (select the gene name)
Genetic variants : HAPMAP389898
Genomic Variants (DGV)UBE2NL [DGVbeta]
DECIPHER (Syndromes)X:142967173-142968357  ENSG00000276380
CONAN: Copy Number AnalysisUBE2NL 
Mutations
ICGC Data PortalUBE2NL 
TCGA Data PortalUBE2NL 
Broad Tumor PortalUBE2NL
OASIS PortalUBE2NL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBE2NL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBE2NL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch UBE2NL
DgiDB (Drug Gene Interaction Database)UBE2NL
DoCM (Curated mutations)UBE2NL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBE2NL (select a term)
intoGenUBE2NL
Cancer3DUBE2NL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUBE2NL
Genetic Testing Registry UBE2NL
NextProtQ5JXB2 [Medical]
TSGene389898
GENETestsUBE2NL
Huge Navigator UBE2NL [HugePedia]
snp3D : Map Gene to Disease389898
BioCentury BCIQUBE2NL
ClinGenUBE2NL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389898
Chemical/Pharm GKB GenePA134943659
Clinical trialUBE2NL
Miscellaneous
canSAR (ICR)UBE2NL (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBE2NL
EVEXUBE2NL
GoPubMedUBE2NL
iHOPUBE2NL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:06 CEST 2017

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