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UBE2NL (ubiquitin conjugating enzyme E2 N like (gene/pseudogene))

Identity

Alias (NCBI)Li174
HGNC (Hugo) UBE2NL
HGNC Previous nameubiquitin-conjugating enzyme E2N-like
 ubiquitin-conjugating enzyme E2N-like (gene/pseudogene)
LocusID (NCBI) 389898
Atlas_Id 47198
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 143884071 and ends at 143885250 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UBE2NL   31710
Cards
Entrez_Gene (NCBI)UBE2NL    ubiquitin conjugating enzyme E2 N like (gene/pseudogene)
AliasesLi174
GeneCards (Weizmann)UBE2NL
Ensembl hg19 (Hinxton)ENSG00000276380 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276380 [Gene_View]  ENSG00000276380 [Sequence]  chrX:143884071-143885250 [Contig_View]  UBE2NL [Vega]
ICGC DataPortalENSG00000276380
TCGA cBioPortalUBE2NL
AceView (NCBI)UBE2NL
Genatlas (Paris)UBE2NL
SOURCE (Princeton)UBE2NL
Genetics Home Reference (NIH)UBE2NL
Genomic and cartography
GoldenPath hg38 (UCSC)UBE2NL  -     chrX:143884071-143885250 +  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBE2NL  -     Xq27.3   [Description]    (hg19-Feb_2009)
GoldenPathUBE2NL - Xq27.3 [CytoView hg19]  UBE2NL - Xq27.3 [CytoView hg38]
ImmunoBaseENSG00000276380
Genome Data Viewer NCBIUBE2NL [Mapview hg19]  
Gene and transcription
Genbank (Entrez)GU727624
RefSeq transcript (Entrez)NM_001012989
Consensus coding sequences : CCDS (NCBI)UBE2NL
Gene ExpressionUBE2NL [ NCBI-GEO ]   UBE2NL [ EBI - ARRAY_EXPRESS ]   UBE2NL [ SEEK ]   UBE2NL [ MEM ]
Gene Expression Viewer (FireBrowse)UBE2NL [ Firebrowse - Broad ]
GenevisibleExpression of UBE2NL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389898
GTEX Portal (Tissue expression)UBE2NL
Human Protein AtlasENSG00000276380-UBE2NL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JXB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JXB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JXB2
PhosPhoSitePlusQ5JXB2
Domaine pattern : Prosite (Expaxy)UBC_2 (PS50127)   
Domains : Interpro (EBI)UBQ-conjugat_E2    UBQ-conjugating_enzyme/RWD   
Domain families : Pfam (Sanger)UQ_con (PF00179)   
Domain families : Pfam (NCBI)pfam00179   
Conserved Domain (NCBI)UBE2NL
SuperfamilyQ5JXB2
AlphaFold pdb e-kbQ5JXB2   
Human Protein Atlas [tissue]ENSG00000276380-UBE2NL [tissue]
HPRD18504
Protein Interaction databases
DIP (DOE-UCLA)Q5JXB2
IntAct (EBI)Q5JXB2
BioGRIDUBE2NL
STRING (EMBL)UBE2NL
ZODIACUBE2NL
Ontologies - Pathways
QuickGOQ5JXB2
Ontology : AmiGOprotein polyubiquitination  nucleus  postreplication repair  ubiquitin conjugating enzyme activity  extracellular exosome  protein K63-linked ubiquitination  
Ontology : EGO-EBIprotein polyubiquitination  nucleus  postreplication repair  ubiquitin conjugating enzyme activity  extracellular exosome  protein K63-linked ubiquitination  
Pathways : KEGGKEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS   
NDEx NetworkUBE2NL
Atlas of Cancer Signalling NetworkUBE2NL
Wikipedia pathwaysUBE2NL
Orthology - Evolution
OrthoDB389898
GeneTree (enSembl)ENSG00000276380
Phylogenetic Trees/Animal Genes : TreeFamUBE2NL
Homologs : HomoloGeneUBE2NL
Homology/Alignments : Family Browser (UCSC)UBE2NL
Gene fusions - Rearrangements
Fusion : QuiverUBE2NL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBE2NL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBE2NL
dbVarUBE2NL
ClinVarUBE2NL
MonarchUBE2NL
1000_GenomesUBE2NL 
Exome Variant ServerUBE2NL
GNOMAD BrowserENSG00000276380
Varsome BrowserUBE2NL
ACMGUBE2NL variants
VarityQ5JXB2
Genomic Variants (DGV)UBE2NL [DGVbeta]
DECIPHERUBE2NL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBE2NL 
Mutations
ICGC Data PortalUBE2NL 
TCGA Data PortalUBE2NL 
Broad Tumor PortalUBE2NL
OASIS PortalUBE2NL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUBE2NL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUBE2NL
DgiDB (Drug Gene Interaction Database)UBE2NL
DoCM (Curated mutations)UBE2NL
CIViC (Clinical Interpretations of Variants in Cancer)UBE2NL
Cancer3DUBE2NL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUBE2NL
MedgenUBE2NL
Genetic Testing Registry UBE2NL
NextProtQ5JXB2 [Medical]
GENETestsUBE2NL
Target ValidationUBE2NL
Huge Navigator UBE2NL [HugePedia]
ClinGenUBE2NL
Clinical trials, drugs, therapy
MyCancerGenomeUBE2NL
Protein Interactions : CTDUBE2NL
Pharm GKB GenePA134943659
PharosQ5JXB2
Clinical trialUBE2NL
Miscellaneous
canSAR (ICR)UBE2NL
HarmonizomeUBE2NL
ARCHS4UBE2NL
DataMed IndexUBE2NL
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUBE2NL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:05:11 CET 2022

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