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UBE2O (ubiquitin-conjugating enzyme E2O)

Identity

Other namesE2-230K
HGNC (Hugo) UBE2O
LocusID (NCBI) 63893
Location 17q25.1
Location_base_pair Starts at 74385613 and ends at 74449288 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)UBE2O   29554
Entrez_Gene (NCBI)UBE2O  63893  ubiquitin-conjugating enzyme E2O
Cards
GeneCards (Weizmann)UBE2O
Ensembl (Hinxton)ENSG00000175931 [Gene_View]  chr17:74385613-74449288 [Contig_View]  UBE2O [Vega]
AceView (NCBI)UBE2O
Genatlas (Paris)UBE2O
SOURCE (Stanford)NM_022066
Genomic and cartography
GoldenPath (UCSC)UBE2O  -  17q25.1   chr17:74385613-74449288 -  17q25.1   [Description]    (hg19-Feb_2009)
EnsemblUBE2O - 17q25.1 [CytoView]
Mapping of homologs : NCBIUBE2O [Mapview]
Gene and transcription
Genbank (Entrez)AB051521 AK000926 AK022940 AK024657 AK025999
RefSeq transcript (SRS)NM_022066
RefSeq transcript (Entrez)NM_022066
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838454 NW_004078092
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838454 NW_004078092
Consensus coding sequences : CCDS (NCBI)UBE2O
Cluster EST : UnigeneHs.16130 [ SRS ] Hs.16130 [ NCBI ]
CGAP (NCI)Hs.16130
Alternative Splicing : Fast-db (Paris)GSHG0013752
Alternative Splicing GalleryENSG00000175931
Gene ExpressionUBE2O [ NCBI-GEO ]   UBE2O [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0C9 (SRS) Q9C0C9 (Uniprot)
NextProtQ9C0C9
With graphics : InterProQ9C0C9
Splice isoforms : SwissVarQ9C0C9(Swissvar)
Domaine pattern : Prosite (SRS)UBIQUITIN_CONJUGAT_1 (PS00183)    UBIQUITIN_CONJUGAT_2 (PS50127)   
Domaine pattern : Prosite (Expaxy)UBIQUITIN_CONJUGAT_1 (PS00183)    UBIQUITIN_CONJUGAT_2 (PS50127)   
Domains : Interpro (SRS)UBQ-conjugat_E2    UBQ-conjugating_enzyme/RWD   
Domains : Interpro (EBI)UBQ-conjugat_E2    UBQ-conjugating_enzyme/RWD   
Related proteins : CluSTrQ9C0C9
Domain families : Pfam (SRS)UQ_con (PF00179)   
Domain families : Pfam (Sanger)UQ_con (PF00179)   
Domain families : Pfam (NCBI)pfam00179   
DMDM63893
Blocks (Seattle)Q9C0C9
Human Protein AtlasENSG00000175931
HPRD10928
IPIIPI00783378   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0C9
IntAct (EBI)Q9C0C9
FunCoupENSG00000175931
REACTOMEUBE2O
Protein Interaction Database63893
BioGRIDUBE2O
InParanoidQ9C0C9
Interologous Interaction database Q9C0C9
IntegromeDBUBE2O
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)UBE2O
SNP (GeneSNP Utah)UBE2O
SNP : HGBaseUBE2O
Genetic variants : HAPMAPUBE2O
Somatic Mutations in Cancer : COSMICUBE2O 
CONAN: Copy Number AnalysisUBE2O 
Mutations and Diseases : HGMDUBE2O
OMIM
GENETests
Disease Genetic AssociationUBE2O
Huge Navigator UBE2O [HugePedia]  UBE2O [HugeCancerGEM]
Genomic VariantsUBE2O  UBE2O [DGVbeta]
snp3D : Map Gene to Disease63893
General knowledge
Homologs : HomoloGeneUBE2O
Homology/Alignments : Family Browser (UCSC)UBE2O
Phylogenetic Trees/Animal Genes : TreeFamUBE2O
Catalytic activity : Enzyme6.3.2.19 [ Enzyme-Expasy ]   6.3.2.19 [ Enzyme-SRS ]   6.3.2.19 [ IntEnz-EBI ]   6.3.2.19 [ BRENDA ]   6.3.2.19 [ KEGG ]   
Chemical/Protein Interactions : CTD63893
Chemical/Pharm GKB GenePA142670651
Clinical trialUBE2O
Cancer Resource (Charite)ENSG00000175931
Ontology : AmiGOubiquitin-protein ligase activity  ATP binding  
Ontology : EGO-EBIubiquitin-protein ligase activity  ATP binding  
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneUBE2O
iHOPUBE2O
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:22:51 CEST 2013
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