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UBFD1 (ubiquitin family domain containing 1)

Identity

Alias_symbol (synonym)FLJ42145
FLJ38870
UBPH
Other alias
HGNC (Hugo) UBFD1
LocusID (NCBI) 56061
Atlas_Id 75427
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 23557541 and ends at 23574389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PMM2 (16p13.2) / UBFD1 (16p12.2)UBFD1 (16p12.2) / PUM2 (2p24.1)UBFD1 (16p12.2) / TMEM159 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBFD1   30565
Cards
Entrez_Gene (NCBI)UBFD1  56061  ubiquitin family domain containing 1
AliasesUBPH
GeneCards (Weizmann)UBFD1
Ensembl hg19 (Hinxton)ENSG00000103353 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103353 [Gene_View]  chr16:23557541-23574389 [Contig_View]  UBFD1 [Vega]
ICGC DataPortalENSG00000103353
TCGA cBioPortalUBFD1
AceView (NCBI)UBFD1
Genatlas (Paris)UBFD1
WikiGenes56061
SOURCE (Princeton)UBFD1
Genetics Home Reference (NIH)UBFD1
Genomic and cartography
GoldenPath hg38 (UCSC)UBFD1  -     chr16:23557541-23574389 +  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBFD1  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblUBFD1 - 16p12.2 [CytoView hg19]  UBFD1 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIUBFD1 [Mapview hg19]  UBFD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025656 AK092696 AK093029 AK096189 AK124139
RefSeq transcript (Entrez)NM_019116
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBFD1
Cluster EST : UnigeneHs.3459 [ NCBI ]
CGAP (NCI)Hs.3459
Alternative Splicing GalleryENSG00000103353
Gene ExpressionUBFD1 [ NCBI-GEO ]   UBFD1 [ EBI - ARRAY_EXPRESS ]   UBFD1 [ SEEK ]   UBFD1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBFD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56061
GTEX Portal (Tissue expression)UBFD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14562   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14562  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14562
Splice isoforms : SwissVarO14562
PhosPhoSitePlusO14562
Domaine pattern : Prosite (Expaxy)UBIQUITIN_1 (PS00299)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin-rel_dom    Ubiquitin_CS    Ubiquitin_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)UBFD1
DMDM Disease mutations56061
Blocks (Seattle)UBFD1
SuperfamilyO14562
Human Protein AtlasENSG00000103353
Peptide AtlasO14562
HPRD15606
IPIIPI00005194   IPI00643653   IPI01008762   
Protein Interaction databases
DIP (DOE-UCLA)O14562
IntAct (EBI)O14562
FunCoupENSG00000103353
BioGRIDUBFD1
STRING (EMBL)UBFD1
ZODIACUBFD1
Ontologies - Pathways
QuickGOO14562
Ontology : AmiGORNA binding  cadherin binding  
Ontology : EGO-EBIRNA binding  cadherin binding  
NDEx NetworkUBFD1
Atlas of Cancer Signalling NetworkUBFD1
Wikipedia pathwaysUBFD1
Orthology - Evolution
OrthoDB56061
GeneTree (enSembl)ENSG00000103353
Phylogenetic Trees/Animal Genes : TreeFamUBFD1
HOVERGENO14562
HOGENOMO14562
Homologs : HomoloGeneUBFD1
Homology/Alignments : Family Browser (UCSC)UBFD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBFD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBFD1
dbVarUBFD1
ClinVarUBFD1
1000_GenomesUBFD1 
Exome Variant ServerUBFD1
ExAC (Exome Aggregation Consortium)UBFD1 (select the gene name)
Genetic variants : HAPMAP56061
Genomic Variants (DGV)UBFD1 [DGVbeta]
DECIPHERUBFD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBFD1 
Mutations
ICGC Data PortalUBFD1 
TCGA Data PortalUBFD1 
Broad Tumor PortalUBFD1
OASIS PortalUBFD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBFD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBFD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBFD1
DgiDB (Drug Gene Interaction Database)UBFD1
DoCM (Curated mutations)UBFD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBFD1 (select a term)
intoGenUBFD1
Cancer3DUBFD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUBFD1
Genetic Testing Registry UBFD1
NextProtO14562 [Medical]
TSGene56061
GENETestsUBFD1
Target ValidationUBFD1
Huge Navigator UBFD1 [HugePedia]
snp3D : Map Gene to Disease56061
BioCentury BCIQUBFD1
ClinGenUBFD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56061
Chemical/Pharm GKB GenePA162407893
Clinical trialUBFD1
Miscellaneous
canSAR (ICR)UBFD1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBFD1
EVEXUBFD1
GoPubMedUBFD1
iHOPUBFD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:48:01 CEST 2017

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