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UBL3 (ubiquitin like 3)

Identity

Alias_namesPNSC1
ubiquitin-like 3
Alias_symbol (synonym)HCG-1
DKFZP434K151
FLJ32018
Other alias
HGNC (Hugo) UBL3
LocusID (NCBI) 5412
Atlas_Id 75428
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 29764408 and ends at 29850683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FABP3 (1p35.2) / UBL3 (13q12.3)GIPC1 (19p13.12) / UBL3 (13q12.3)RGS5 (1q23.3) / UBL3 (13q12.3)
RNASE1 (14q11.2) / UBL3 (13q12.3)UBL3 (13q12.3) / CKAP2 (13q14.3)UBL3 (13q12.3) / CRISPLD2 (16q24.1)
UBL3 (13q12.3) / FZD5 (2q33.3)UBL3 (13q12.3) / MTIF3 (13q12.2)UBL3 (13q12.3) / PAN3 (13q12.2)
UBL3 (13q12.3) / ZNF211 (19q13.43)ZNF552 (19q13.43) / UBL3 (13q12.3)UBL3 CKAP2
UBL3 CRISPLD2UBL3 PAN3UBL3 ZNF211
ZNF552 UBL3GIPC1 UBL3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 7 ]
  t(13;13)(q12;q12) UBL3/MTIF3
t(13;13)(q12;q12) UBL3/PAN3
t(13;13)(q12;q14) UBL3/CKAP2
t(13;16)(q12;q24) UBL3/CRISPLD2
t(13;19)(q12;p13) GIPC1/UBL3
t(13;19)(q12;q13) UBL3/ZNF211
t(13;19)(q12;q13) ZNF552/UBL3

External links

Nomenclature
HGNC (Hugo)UBL3   12504
Cards
Entrez_Gene (NCBI)UBL3  5412  ubiquitin like 3
AliasesHCG-1; PNSC1
GeneCards (Weizmann)UBL3
Ensembl hg19 (Hinxton)ENSG00000122042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122042 [Gene_View]  ENSG00000122042 [Sequence]  chr13:29764408-29850683 [Contig_View]  UBL3 [Vega]
ICGC DataPortalENSG00000122042
TCGA cBioPortalUBL3
AceView (NCBI)UBL3
Genatlas (Paris)UBL3
WikiGenes5412
SOURCE (Princeton)UBL3
Genetics Home Reference (NIH)UBL3
Genomic and cartography
GoldenPath hg38 (UCSC)UBL3  -     chr13:29764408-29850683 -  13q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBL3  -     13q12.3   [Description]    (hg19-Feb_2009)
EnsemblUBL3 - 13q12.3 [CytoView hg19]  UBL3 - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBIUBL3 [Mapview hg19]  UBL3 [Mapview hg38]
OMIM604711   
Gene and transcription
Genbank (Entrez)AF044221 AK056580 AK307361 AK309253 AK311846
RefSeq transcript (Entrez)NM_007106
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBL3
Cluster EST : UnigeneHs.145575 [ NCBI ]
CGAP (NCI)Hs.145575
Alternative Splicing GalleryENSG00000122042
Gene ExpressionUBL3 [ NCBI-GEO ]   UBL3 [ EBI - ARRAY_EXPRESS ]   UBL3 [ SEEK ]   UBL3 [ MEM ]
Gene Expression Viewer (FireBrowse)UBL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5412
GTEX Portal (Tissue expression)UBL3
Human Protein AtlasENSG00000122042-UBL3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95164   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95164  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95164
Splice isoforms : SwissVarO95164
PhosPhoSitePlusO95164
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)MUB    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UBL3
DMDM Disease mutations5412
Blocks (Seattle)UBL3
PDB (SRS)2GOW   
PDB (PDBSum)2GOW   
PDB (IMB)2GOW   
PDB (RSDB)2GOW   
Structural Biology KnowledgeBase2GOW   
SCOP (Structural Classification of Proteins)2GOW   
CATH (Classification of proteins structures)2GOW   
SuperfamilyO95164
Human Protein Atlas [tissue]ENSG00000122042-UBL3 [tissue]
Peptide AtlasO95164
HPRD05275
IPIIPI00026669   
Protein Interaction databases
DIP (DOE-UCLA)O95164
IntAct (EBI)O95164
FunCoupENSG00000122042
BioGRIDUBL3
STRING (EMBL)UBL3
ZODIACUBL3
Ontologies - Pathways
QuickGOO95164
Ontology : AmiGOintracellular  plasma membrane  extracellular exosome  
Ontology : EGO-EBIintracellular  plasma membrane  extracellular exosome  
NDEx NetworkUBL3
Atlas of Cancer Signalling NetworkUBL3
Wikipedia pathwaysUBL3
Orthology - Evolution
OrthoDB5412
GeneTree (enSembl)ENSG00000122042
Phylogenetic Trees/Animal Genes : TreeFamUBL3
HOVERGENO95164
HOGENOMO95164
Homologs : HomoloGeneUBL3
Homology/Alignments : Family Browser (UCSC)UBL3
Gene fusions - Rearrangements
Fusion PortalUBL3 CKAP2
Fusion PortalUBL3 CRISPLD2
Fusion PortalUBL3 PAN3
Fusion PortalUBL3 ZNF211
Fusion PortalZNF552 UBL3
Fusion PortalGIPC1 UBL3
Fusion : QuiverUBL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBL3
dbVarUBL3
ClinVarUBL3
1000_GenomesUBL3 
Exome Variant ServerUBL3
ExAC (Exome Aggregation Consortium)ENSG00000122042
GNOMAD BrowserENSG00000122042
Varsome BrowserUBL3
Genetic variants : HAPMAP5412
Genomic Variants (DGV)UBL3 [DGVbeta]
DECIPHERUBL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBL3 
Mutations
ICGC Data PortalUBL3 
TCGA Data PortalUBL3 
Broad Tumor PortalUBL3
OASIS PortalUBL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBL3
DgiDB (Drug Gene Interaction Database)UBL3
DoCM (Curated mutations)UBL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBL3 (select a term)
intoGenUBL3
Cancer3DUBL3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604711   
Orphanet
DisGeNETUBL3
MedgenUBL3
Genetic Testing Registry UBL3
NextProtO95164 [Medical]
TSGene5412
GENETestsUBL3
Target ValidationUBL3
Huge Navigator UBL3 [HugePedia]
snp3D : Map Gene to Disease5412
BioCentury BCIQUBL3
ClinGenUBL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5412
Chemical/Pharm GKB GenePA37151
Clinical trialUBL3
Miscellaneous
canSAR (ICR)UBL3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBL3
EVEXUBL3
GoPubMedUBL3
iHOPUBL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:37:33 CEST 2018
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