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UBL4A (ubiquitin-like 4A)

Identity

Alias_namesUBL4
ubiquitin-like 4
ubiquitin-like 4A
Alias_symbol (synonym)GDX
DXS254E
GET5
MDY2
TMA24
Other aliasDX254E
G6PD
HGNC (Hugo) UBL4A
LocusID (NCBI) 8266
Atlas_Id 75429
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153712056 and ends at 153715009 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBL4A   12505
Cards
Entrez_Gene (NCBI)UBL4A  8266  ubiquitin-like 4A
AliasesDX254E; DXS254E; G6PD; GDX; 
GET5; MDY2; TMA24; UBL4
GeneCards (Weizmann)UBL4A
Ensembl hg19 (Hinxton)ENSG00000102178 [Gene_View]  chrX:153712056-153715009 [Contig_View]  UBL4A [Vega]
Ensembl hg38 (Hinxton)ENSG00000102178 [Gene_View]  chrX:153712056-153715009 [Contig_View]  UBL4A [Vega]
ICGC DataPortalENSG00000102178
TCGA cBioPortalUBL4A
AceView (NCBI)UBL4A
Genatlas (Paris)UBL4A
WikiGenes8266
SOURCE (Princeton)UBL4A
Genetics Home Reference (NIH)UBL4A
Genomic and cartography
GoldenPath hg19 (UCSC)UBL4A  -     chrX:153712056-153715009 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UBL4A  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblUBL4A - Xq28 [CytoView hg19]  UBL4A - Xq28 [CytoView hg38]
Mapping of homologs : NCBIUBL4A [Mapview hg19]  UBL4A [Mapview hg38]
OMIM312070   
Gene and transcription
Genbank (Entrez)AK000405 AK293227 BC020254 BC043346 BC053589
RefSeq transcript (Entrez)NM_014235
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)UBL4A
Cluster EST : UnigeneHs.76480 [ NCBI ]
CGAP (NCI)Hs.76480
Alternative Splicing GalleryENSG00000102178
Gene ExpressionUBL4A [ NCBI-GEO ]   UBL4A [ EBI - ARRAY_EXPRESS ]   UBL4A [ SEEK ]   UBL4A [ MEM ]
Gene Expression Viewer (FireBrowse)UBL4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8266
GTEX Portal (Tissue expression)UBL4A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11441   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11441  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11441
Splice isoforms : SwissVarP11441
PhosPhoSitePlusP11441
Domaine pattern : Prosite (Expaxy)UBIQUITIN_1 (PS00299)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin    Ubiquitin-like    Ubiquitin-rel_dom    Ubiquitin_CS   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)UBL4A
DMDM Disease mutations8266
Blocks (Seattle)UBL4A
PDB (SRS)2DZI    4WWR    4X86   
PDB (PDBSum)2DZI    4WWR    4X86   
PDB (IMB)2DZI    4WWR    4X86   
PDB (RSDB)2DZI    4WWR    4X86   
Structural Biology KnowledgeBase2DZI    4WWR    4X86   
SCOP (Structural Classification of Proteins)2DZI    4WWR    4X86   
CATH (Classification of proteins structures)2DZI    4WWR    4X86   
SuperfamilyP11441
Human Protein AtlasENSG00000102178
Peptide AtlasP11441
HPRD02417
IPIIPI00005658   IPI00552277   IPI00879492   IPI00878700   
Protein Interaction databases
DIP (DOE-UCLA)P11441
IntAct (EBI)P11441
FunCoupENSG00000102178
BioGRIDUBL4A
STRING (EMBL)UBL4A
ZODIACUBL4A
Ontologies - Pathways
QuickGOP11441
Ontology : AmiGOprotein binding  nucleus  cytoplasm  cytosol  cellular protein modification process  transport  membrane  ubiquitin-like protein transferase activity  tail-anchored membrane protein insertion into ER membrane  BAT3 complex  positive regulation of ER-associated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  cytosol  cellular protein modification process  transport  membrane  ubiquitin-like protein transferase activity  tail-anchored membrane protein insertion into ER membrane  BAT3 complex  positive regulation of ER-associated ubiquitin-dependent protein catabolic process  
NDEx NetworkUBL4A
Atlas of Cancer Signalling NetworkUBL4A
Wikipedia pathwaysUBL4A
Orthology - Evolution
OrthoDB8266
GeneTree (enSembl)ENSG00000102178
Phylogenetic Trees/Animal Genes : TreeFamUBL4A
HOVERGENP11441
HOGENOMP11441
Homologs : HomoloGeneUBL4A
Homology/Alignments : Family Browser (UCSC)UBL4A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBL4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBL4A
dbVarUBL4A
ClinVarUBL4A
1000_GenomesUBL4A 
Exome Variant ServerUBL4A
ExAC (Exome Aggregation Consortium)UBL4A (select the gene name)
Genetic variants : HAPMAP8266
Genomic Variants (DGV)UBL4A [DGVbeta]
DECIPHER (Syndromes)X:153712056-153715009  ENSG00000102178
CONAN: Copy Number AnalysisUBL4A 
Mutations
ICGC Data PortalUBL4A 
TCGA Data PortalUBL4A 
Broad Tumor PortalUBL4A
OASIS PortalUBL4A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBL4A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBL4A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBL4A
DgiDB (Drug Gene Interaction Database)UBL4A
DoCM (Curated mutations)UBL4A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBL4A (select a term)
intoGenUBL4A
Cancer3DUBL4A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM312070   
Orphanet
MedgenUBL4A
Genetic Testing Registry UBL4A
NextProtP11441 [Medical]
TSGene8266
GENETestsUBL4A
Huge Navigator UBL4A [HugePedia]
snp3D : Map Gene to Disease8266
BioCentury BCIQUBL4A
ClinGenUBL4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8266
Chemical/Pharm GKB GenePA37152
Clinical trialUBL4A
Miscellaneous
canSAR (ICR)UBL4A (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBL4A
EVEXUBL4A
GoPubMedUBL4A
iHOPUBL4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:50:39 CET 2017

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