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UBL4A (ubiquitin like 4A)

Identity

Other aliasDX254E
DXS254E
G6PD
GDX
GET5
MDY2
TMA24
UBL4
HGNC (Hugo) UBL4A
LocusID (NCBI) 8266
Atlas_Id 57866
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154483717 and ends at 154486670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBL4A   12505
Cards
Entrez_Gene (NCBI)UBL4A  8266  ubiquitin like 4A
AliasesDX254E; DXS254E; G6PD; GDX; 
GET5; MDY2; TMA24; UBL4
GeneCards (Weizmann)UBL4A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chrX:154483717-154486670 [Contig_View]  UBL4A [Vega]
TCGA cBioPortalUBL4A
AceView (NCBI)UBL4A
Genatlas (Paris)UBL4A
WikiGenes8266
SOURCE (Princeton)UBL4A
Genetics Home Reference (NIH)UBL4A
Genomic and cartography
GoldenPath hg38 (UCSC)UBL4A  -     chrX:154483717-154486670 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBL4A  -     Xq28   [Description]    (hg19-Feb_2009)
GoldenPathUBL4A - Xq28 [CytoView hg19]  UBL4A - Xq28 [CytoView hg38]
Mapping of homologs : NCBIUBL4A [Mapview hg19]  UBL4A [Mapview hg38]
OMIM312070   
Gene and transcription
Genbank (Entrez)AK000405 AK293227 BC020254 BC043346 BC053589
RefSeq transcript (Entrez)NM_014235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBL4A
Cluster EST : UnigeneHs.76480 [ NCBI ]
CGAP (NCI)Hs.76480
Gene ExpressionUBL4A [ NCBI-GEO ]   UBL4A [ EBI - ARRAY_EXPRESS ]   UBL4A [ SEEK ]   UBL4A [ MEM ]
Gene Expression Viewer (FireBrowse)UBL4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8266
GTEX Portal (Tissue expression)UBL4A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11441   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11441  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11441
Splice isoforms : SwissVarP11441
PhosPhoSitePlusP11441
Domaine pattern : Prosite (Expaxy)UBIQUITIN_1 (PS00299)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin    Ubiquitin-like_domsf    Ubiquitin_CS    Ubiquitin_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)UBL4A
DMDM Disease mutations8266
Blocks (Seattle)UBL4A
PDB (RSDB)2DZI    4WWR    4X86   
PDB Europe2DZI    4WWR    4X86   
PDB (PDBSum)2DZI    4WWR    4X86   
PDB (IMB)2DZI    4WWR    4X86   
Structural Biology KnowledgeBase2DZI    4WWR    4X86   
SCOP (Structural Classification of Proteins)2DZI    4WWR    4X86   
CATH (Classification of proteins structures)2DZI    4WWR    4X86   
SuperfamilyP11441
Peptide AtlasP11441
IPIIPI00005658   IPI00552277   IPI00879492   IPI00878700   
Protein Interaction databases
DIP (DOE-UCLA)P11441
IntAct (EBI)P11441
BioGRIDUBL4A
STRING (EMBL)UBL4A
ZODIACUBL4A
Ontologies - Pathways
QuickGOP11441
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytoplasm  cytosol  cellular protein modification process  membrane  ubiquitin-like protein transferase activity  chaperone binding  tail-anchored membrane protein insertion into ER membrane  tail-anchored membrane protein insertion into ER membrane  BAT3 complex  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytoplasm  cytosol  cellular protein modification process  membrane  ubiquitin-like protein transferase activity  chaperone binding  tail-anchored membrane protein insertion into ER membrane  tail-anchored membrane protein insertion into ER membrane  BAT3 complex  
NDEx NetworkUBL4A
Atlas of Cancer Signalling NetworkUBL4A
Wikipedia pathwaysUBL4A
Orthology - Evolution
OrthoDB8266
Phylogenetic Trees/Animal Genes : TreeFamUBL4A
HOGENOMP11441
Homologs : HomoloGeneUBL4A
Homology/Alignments : Family Browser (UCSC)UBL4A
Gene fusions - Rearrangements
Fusion : QuiverUBL4A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBL4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBL4A
dbVarUBL4A
ClinVarUBL4A
1000_GenomesUBL4A 
Exome Variant ServerUBL4A
Varsome BrowserUBL4A
Genetic variants : HAPMAP8266
Genomic Variants (DGV)UBL4A [DGVbeta]
DECIPHERUBL4A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBL4A 
Mutations
ICGC Data PortalUBL4A 
TCGA Data PortalUBL4A 
Broad Tumor PortalUBL4A
OASIS PortalUBL4A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBL4A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUBL4A
Mutations and Diseases : HGMDUBL4A
BioMutasearch UBL4A
DgiDB (Drug Gene Interaction Database)UBL4A
DoCM (Curated mutations)UBL4A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBL4A (select a term)
intoGenUBL4A
Cancer3DUBL4A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM312070   
Orphanet
DisGeNETUBL4A
MedgenUBL4A
Genetic Testing Registry UBL4A
NextProtP11441 [Medical]
TSGene8266
GENETestsUBL4A
Target ValidationUBL4A
Huge Navigator UBL4A [HugePedia]
snp3D : Map Gene to Disease8266
BioCentury BCIQUBL4A
ClinGenUBL4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8266
Chemical/Pharm GKB GenePA37152
Clinical trialUBL4A
Miscellaneous
canSAR (ICR)UBL4A (select the gene name)
DataMed IndexUBL4A
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBL4A
EVEXUBL4A
GoPubMedUBL4A
iHOPUBL4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 12 16:01:19 CEST 2019

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