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UBL4B (ubiquitin-like 4B)

Identity

Alias_namesubiquitin-like 4B
Alias_symbol (synonym)FLJ25690
Other alias-
HGNC (Hugo) UBL4B
LocusID (NCBI) 164153
Atlas_Id 75430
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 110655062 and ends at 110656569 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UBL4B (1p13.3) / NOP56 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBL4B   32309
Cards
Entrez_Gene (NCBI)UBL4B  164153  ubiquitin-like 4B
Aliases
GeneCards (Weizmann)UBL4B
Ensembl hg19 (Hinxton)ENSG00000186150 [Gene_View]  chr1:110655062-110656569 [Contig_View]  UBL4B [Vega]
Ensembl hg38 (Hinxton)ENSG00000186150 [Gene_View]  chr1:110655062-110656569 [Contig_View]  UBL4B [Vega]
ICGC DataPortalENSG00000186150
TCGA cBioPortalUBL4B
AceView (NCBI)UBL4B
Genatlas (Paris)UBL4B
WikiGenes164153
SOURCE (Princeton)UBL4B
Genetics Home Reference (NIH)UBL4B
Genomic and cartography
GoldenPath hg19 (UCSC)UBL4B  -     chr1:110655062-110656569 +  1p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UBL4B  -     1p13.3   [Description]    (hg38-Dec_2013)
EnsemblUBL4B - 1p13.3 [CytoView hg19]  UBL4B - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIUBL4B [Mapview hg19]  UBL4B [Mapview hg38]
OMIM611127   
Gene and transcription
Genbank (Entrez)AA608970 AK098556 BC058929 HQ448068
RefSeq transcript (Entrez)NM_203412
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)UBL4B
Cluster EST : UnigeneHs.374027 [ NCBI ]
CGAP (NCI)Hs.374027
Alternative Splicing GalleryENSG00000186150
Gene ExpressionUBL4B [ NCBI-GEO ]   UBL4B [ EBI - ARRAY_EXPRESS ]   UBL4B [ SEEK ]   UBL4B [ MEM ]
Gene Expression Viewer (FireBrowse)UBL4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164153
GTEX Portal (Tissue expression)UBL4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7F7
Splice isoforms : SwissVarQ8N7F7
PhosPhoSitePlusQ8N7F7
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin-like    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)UBL4B
DMDM Disease mutations164153
Blocks (Seattle)UBL4B
SuperfamilyQ8N7F7
Human Protein AtlasENSG00000186150
Peptide AtlasQ8N7F7
HPRD17314
IPIIPI00167196   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7F7
IntAct (EBI)Q8N7F7
FunCoupENSG00000186150
BioGRIDUBL4B
STRING (EMBL)UBL4B
ZODIACUBL4B
Ontologies - Pathways
QuickGOQ8N7F7
Ontology : AmiGOprotein binding  cytoplasm  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIprotein binding  cytoplasm  positive regulation of protein targeting to mitochondrion  
NDEx NetworkUBL4B
Atlas of Cancer Signalling NetworkUBL4B
Wikipedia pathwaysUBL4B
Orthology - Evolution
OrthoDB164153
GeneTree (enSembl)ENSG00000186150
Phylogenetic Trees/Animal Genes : TreeFamUBL4B
HOVERGENQ8N7F7
HOGENOMQ8N7F7
Homologs : HomoloGeneUBL4B
Homology/Alignments : Family Browser (UCSC)UBL4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBL4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBL4B
dbVarUBL4B
ClinVarUBL4B
1000_GenomesUBL4B 
Exome Variant ServerUBL4B
ExAC (Exome Aggregation Consortium)UBL4B (select the gene name)
Genetic variants : HAPMAP164153
Genomic Variants (DGV)UBL4B [DGVbeta]
DECIPHER (Syndromes)1:110655062-110656569  ENSG00000186150
CONAN: Copy Number AnalysisUBL4B 
Mutations
ICGC Data PortalUBL4B 
TCGA Data PortalUBL4B 
Broad Tumor PortalUBL4B
OASIS PortalUBL4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBL4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBL4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBL4B
DgiDB (Drug Gene Interaction Database)UBL4B
DoCM (Curated mutations)UBL4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBL4B (select a term)
intoGenUBL4B
Cancer3DUBL4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611127   
Orphanet
MedgenUBL4B
Genetic Testing Registry UBL4B
NextProtQ8N7F7 [Medical]
TSGene164153
GENETestsUBL4B
Huge Navigator UBL4B [HugePedia]
snp3D : Map Gene to Disease164153
BioCentury BCIQUBL4B
ClinGenUBL4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD164153
Chemical/Pharm GKB GenePA142670661
Clinical trialUBL4B
Miscellaneous
canSAR (ICR)UBL4B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBL4B
EVEXUBL4B
GoPubMedUBL4B
iHOPUBL4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:39 CET 2017

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