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UBL5 (ubiquitin like 5)

Identity

Alias_namesubiquitin-like 5
Other aliasHUB1
HGNC (Hugo) UBL5
LocusID (NCBI) 59286
Atlas_Id 55394
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9827892 and ends at 9830121 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNPY2 (12q13.3) / UBL5 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBL5   13736
Cards
Entrez_Gene (NCBI)UBL5  59286  ubiquitin like 5
AliasesHUB1
GeneCards (Weizmann)UBL5
Ensembl hg19 (Hinxton)ENSG00000198258 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198258 [Gene_View]  ENSG00000198258 [Sequence]  chr19:9827892-9830121 [Contig_View]  UBL5 [Vega]
ICGC DataPortalENSG00000198258
TCGA cBioPortalUBL5
AceView (NCBI)UBL5
Genatlas (Paris)UBL5
WikiGenes59286
SOURCE (Princeton)UBL5
Genetics Home Reference (NIH)UBL5
Genomic and cartography
GoldenPath hg38 (UCSC)UBL5  -     chr19:9827892-9830121 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBL5  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblUBL5 - 19p13.2 [CytoView hg19]  UBL5 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIUBL5 [Mapview hg19]  UBL5 [Mapview hg38]
OMIM606849   
Gene and transcription
Genbank (Entrez)AF313915 AK128885 AK309258 AK311889 AV682189
RefSeq transcript (Entrez)NM_001048241 NM_024292
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBL5
Cluster EST : UnigeneHs.534477 [ NCBI ]
CGAP (NCI)Hs.534477
Alternative Splicing GalleryENSG00000198258
Gene ExpressionUBL5 [ NCBI-GEO ]   UBL5 [ EBI - ARRAY_EXPRESS ]   UBL5 [ SEEK ]   UBL5 [ MEM ]
Gene Expression Viewer (FireBrowse)UBL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59286
GTEX Portal (Tissue expression)UBL5
Human Protein AtlasENSG00000198258-UBL5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZL1
Splice isoforms : SwissVarQ9BZL1
PhosPhoSitePlusQ9BZL1
Domains : Interpro (EBI)Ubiquitin-like_domsf    Ubiquitin_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Conserved Domain (NCBI)UBL5
DMDM Disease mutations59286
Blocks (Seattle)UBL5
PDB (SRS)1P0R    4PYU   
PDB (PDBSum)1P0R    4PYU   
PDB (IMB)1P0R    4PYU   
PDB (RSDB)1P0R    4PYU   
Structural Biology KnowledgeBase1P0R    4PYU   
SCOP (Structural Classification of Proteins)1P0R    4PYU   
CATH (Classification of proteins structures)1P0R    4PYU   
SuperfamilyQ9BZL1
Human Protein Atlas [tissue]ENSG00000198258-UBL5 [tissue]
Peptide AtlasQ9BZL1
HPRD06028
IPIIPI00013241   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZL1
IntAct (EBI)Q9BZL1
FunCoupENSG00000198258
BioGRIDUBL5
STRING (EMBL)UBL5
ZODIACUBL5
Ontologies - Pathways
QuickGOQ9BZL1
Ontology : AmiGOmRNA splicing, via spliceosome  protein binding  nucleus  cytoplasm  cytoplasm  cellular protein modification process  protein tag  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBImRNA splicing, via spliceosome  protein binding  nucleus  cytoplasm  cytoplasm  cellular protein modification process  protein tag  positive regulation of protein targeting to mitochondrion  
NDEx NetworkUBL5
Atlas of Cancer Signalling NetworkUBL5
Wikipedia pathwaysUBL5
Orthology - Evolution
OrthoDB59286
GeneTree (enSembl)ENSG00000198258
Phylogenetic Trees/Animal Genes : TreeFamUBL5
HOVERGENQ9BZL1
HOGENOMQ9BZL1
Homologs : HomoloGeneUBL5
Homology/Alignments : Family Browser (UCSC)UBL5
Gene fusions - Rearrangements
Fusion : QuiverUBL5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBL5
dbVarUBL5
ClinVarUBL5
1000_GenomesUBL5 
Exome Variant ServerUBL5
ExAC (Exome Aggregation Consortium)ENSG00000198258
GNOMAD BrowserENSG00000198258
Varsome BrowserUBL5
Genetic variants : HAPMAP59286
Genomic Variants (DGV)UBL5 [DGVbeta]
DECIPHERUBL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBL5 
Mutations
ICGC Data PortalUBL5 
TCGA Data PortalUBL5 
Broad Tumor PortalUBL5
OASIS PortalUBL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBL5
DgiDB (Drug Gene Interaction Database)UBL5
DoCM (Curated mutations)UBL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBL5 (select a term)
intoGenUBL5
Cancer3DUBL5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606849   
Orphanet
DisGeNETUBL5
MedgenUBL5
Genetic Testing Registry UBL5
NextProtQ9BZL1 [Medical]
TSGene59286
GENETestsUBL5
Target ValidationUBL5
Huge Navigator UBL5 [HugePedia]
snp3D : Map Gene to Disease59286
BioCentury BCIQUBL5
ClinGenUBL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59286
Chemical/Pharm GKB GenePA37805
Clinical trialUBL5
Miscellaneous
canSAR (ICR)UBL5 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBL5
EVEXUBL5
GoPubMedUBL5
iHOPUBL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 12:00:17 CEST 2018

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