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UBL7 (ubiquitin-like 7)

Identity

Alias_namesubiquitin-like 7 (bone marrow stromal cell-derived)
ubiquitin-like 7
Alias_symbol (synonym)BMSC-UbP
MGC14421
Other aliasTCBA1
HGNC (Hugo) UBL7
LocusID (NCBI) 84993
Atlas_Id 75432
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 74738318 and ends at 74753529 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MAPK9 (5q35.3) / UBL7 (15q24.1)UBL7 (15q24.1) / HSPA5 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBL7   28221
Cards
Entrez_Gene (NCBI)UBL7  84993  ubiquitin-like 7
AliasesBMSC-UbP; TCBA1
GeneCards (Weizmann)UBL7
Ensembl hg19 (Hinxton)ENSG00000138629 [Gene_View]  chr15:74738318-74753529 [Contig_View]  UBL7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138629 [Gene_View]  chr15:74738318-74753529 [Contig_View]  UBL7 [Vega]
ICGC DataPortalENSG00000138629
TCGA cBioPortalUBL7
AceView (NCBI)UBL7
Genatlas (Paris)UBL7
WikiGenes84993
SOURCE (Princeton)UBL7
Genetics Home Reference (NIH)UBL7
Genomic and cartography
GoldenPath hg19 (UCSC)UBL7  -     chr15:74738318-74753529 -  15q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UBL7  -     15q24.1   [Description]    (hg38-Dec_2013)
EnsemblUBL7 - 15q24.1 [CytoView hg19]  UBL7 - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBIUBL7 [Mapview hg19]  UBL7 [Mapview hg38]
OMIM609748   
Gene and transcription
Genbank (Entrez)AY037166 BC007913 BC030055 BC033919 BG704085
RefSeq transcript (Entrez)NM_001286739 NM_001286740 NM_001286741 NM_001286742 NM_032907 NM_201265
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)UBL7
Cluster EST : UnigeneHs.334713 [ NCBI ]
CGAP (NCI)Hs.334713
Alternative Splicing GalleryENSG00000138629
Gene ExpressionUBL7 [ NCBI-GEO ]   UBL7 [ EBI - ARRAY_EXPRESS ]   UBL7 [ SEEK ]   UBL7 [ MEM ]
Gene Expression Viewer (FireBrowse)UBL7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84993
GTEX Portal (Tissue expression)UBL7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S82
Splice isoforms : SwissVarQ96S82
PhosPhoSitePlusQ96S82
Domaine pattern : Prosite (Expaxy)UBA (PS50030)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)UBA-like    UBA/transl_elong_EF1B_N_euk    UBA/Ts_N    Ubiquilin    Ubiquitin-like    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)UBA (PF00627)    ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00627    pfam00240   
Domain families : Smart (EMBL)UBA (SM00165)  UBQ (SM00213)  
Conserved Domain (NCBI)UBL7
DMDM Disease mutations84993
Blocks (Seattle)UBL7
PDB (SRS)2CWB    2DEN   
PDB (PDBSum)2CWB    2DEN   
PDB (IMB)2CWB    2DEN   
PDB (RSDB)2CWB    2DEN   
Structural Biology KnowledgeBase2CWB    2DEN   
SCOP (Structural Classification of Proteins)2CWB    2DEN   
CATH (Classification of proteins structures)2CWB    2DEN   
SuperfamilyQ96S82
Human Protein AtlasENSG00000138629
Peptide AtlasQ96S82
HPRD16556
IPIIPI00793209   
Protein Interaction databases
DIP (DOE-UCLA)Q96S82
IntAct (EBI)Q96S82
FunCoupENSG00000138629
BioGRIDUBL7
STRING (EMBL)UBL7
ZODIACUBL7
Ontologies - Pathways
QuickGOQ96S82
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkUBL7
Atlas of Cancer Signalling NetworkUBL7
Wikipedia pathwaysUBL7
Orthology - Evolution
OrthoDB84993
GeneTree (enSembl)ENSG00000138629
Phylogenetic Trees/Animal Genes : TreeFamUBL7
HOVERGENQ96S82
HOGENOMQ96S82
Homologs : HomoloGeneUBL7
Homology/Alignments : Family Browser (UCSC)UBL7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBL7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBL7
dbVarUBL7
ClinVarUBL7
1000_GenomesUBL7 
Exome Variant ServerUBL7
ExAC (Exome Aggregation Consortium)UBL7 (select the gene name)
Genetic variants : HAPMAP84993
Genomic Variants (DGV)UBL7 [DGVbeta]
DECIPHER (Syndromes)15:74738318-74753529  ENSG00000138629
CONAN: Copy Number AnalysisUBL7 
Mutations
ICGC Data PortalUBL7 
TCGA Data PortalUBL7 
Broad Tumor PortalUBL7
OASIS PortalUBL7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBL7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBL7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBL7
DgiDB (Drug Gene Interaction Database)UBL7
DoCM (Curated mutations)UBL7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBL7 (select a term)
intoGenUBL7
Cancer3DUBL7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609748   
Orphanet
MedgenUBL7
Genetic Testing Registry UBL7
NextProtQ96S82 [Medical]
TSGene84993
GENETestsUBL7
Huge Navigator UBL7 [HugePedia]
snp3D : Map Gene to Disease84993
BioCentury BCIQUBL7
ClinGenUBL7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84993
Chemical/Pharm GKB GenePA142670645
Clinical trialUBL7
Miscellaneous
canSAR (ICR)UBL7 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBL7
EVEXUBL7
GoPubMedUBL7
iHOPUBL7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:40 CET 2017

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