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UBLCP1 (ubiquitin like domain containing CTD phosphatase 1)

Identity

Alias_namesubiquitin-like domain containing CTD phosphatase 1
Alias_symbol (synonym)MGC10067
CPUB1
Other alias
HGNC (Hugo) UBLCP1
LocusID (NCBI) 134510
Atlas_Id 54745
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 159263067 and ends at 159286040 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PTPN2 (18p11.21) / UBLCP1 (5q33.3)UBLCP1 (5q33.3) / INS-IGF2 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBLCP1   28110
Cards
Entrez_Gene (NCBI)UBLCP1  134510  ubiquitin like domain containing CTD phosphatase 1
AliasesCPUB1
GeneCards (Weizmann)UBLCP1
Ensembl hg19 (Hinxton)ENSG00000164332 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164332 [Gene_View]  chr5:159263067-159286040 [Contig_View]  UBLCP1 [Vega]
ICGC DataPortalENSG00000164332
TCGA cBioPortalUBLCP1
AceView (NCBI)UBLCP1
Genatlas (Paris)UBLCP1
WikiGenes134510
SOURCE (Princeton)UBLCP1
Genetics Home Reference (NIH)UBLCP1
Genomic and cartography
GoldenPath hg38 (UCSC)UBLCP1  -     chr5:159263067-159286040 +  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBLCP1  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblUBLCP1 - 5q33.3 [CytoView hg19]  UBLCP1 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIUBLCP1 [Mapview hg19]  UBLCP1 [Mapview hg38]
OMIM609867   
Gene and transcription
Genbank (Entrez)AK057996 AY444562 BC013425 BM676716 BM677370
RefSeq transcript (Entrez)NM_145049
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBLCP1
Cluster EST : UnigeneHs.591733 [ NCBI ]
CGAP (NCI)Hs.591733
Alternative Splicing GalleryENSG00000164332
Gene ExpressionUBLCP1 [ NCBI-GEO ]   UBLCP1 [ EBI - ARRAY_EXPRESS ]   UBLCP1 [ SEEK ]   UBLCP1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBLCP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134510
GTEX Portal (Tissue expression)UBLCP1
Human Protein AtlasENSG00000164332-UBLCP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVY7
Splice isoforms : SwissVarQ8WVY7
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
PhosPhoSitePlusQ8WVY7
Domaine pattern : Prosite (Expaxy)FCP1 (PS50969)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)FCP1_dom    HAD-like_dom    HAD-SF_hydro_IIID    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)NIF (PF03031)    ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam03031    pfam00240   
Domain families : Smart (EMBL)CPDc (SM00577)  UBQ (SM00213)  
Conserved Domain (NCBI)UBLCP1
DMDM Disease mutations134510
Blocks (Seattle)UBLCP1
PDB (SRS)2KX3    2LGD    2M17   
PDB (PDBSum)2KX3    2LGD    2M17   
PDB (IMB)2KX3    2LGD    2M17   
PDB (RSDB)2KX3    2LGD    2M17   
Structural Biology KnowledgeBase2KX3    2LGD    2M17   
SCOP (Structural Classification of Proteins)2KX3    2LGD    2M17   
CATH (Classification of proteins structures)2KX3    2LGD    2M17   
SuperfamilyQ8WVY7
Human Protein Atlas [tissue]ENSG00000164332-UBLCP1 [tissue]
Peptide AtlasQ8WVY7
HPRD08318
IPIIPI00291669   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVY7
IntAct (EBI)Q8WVY7
FunCoup8AHREF=http://funcoup.sbc.su.se/search/network.action?query.geneQuery=ENSG00000164332&query.primaryGenomeID=22 TARGET=FunCoup>ENSG00000164332
BioGRIDUBLCP1
STRING (EMBL)UBLCP1
ZODIACUBLCP1
Ontologies - Pathways
QuickGOQ8WVY7
Ontology : AmiGOprotein serine/threonine phosphatase activity  protein binding  nucleus  nucleolus  protein dephosphorylation  
Ontology : EGO-EBIprotein serine/threonine phosphatase activity  protein binding  nucleus  nucleolus  protein dephosphorylation  
NDEx NetworkUBLCP1
Atlas of Cancer Signalling NetworkUBLCP1
Wikipedia pathwaysUBLCP1
Orthology - Evolution
OrthoDB134510
GeneTree (enSembl)ENSG00000164332
Phylogenetic Trees/Animal Genes : TreeFamUBLCP1
HOVERGENQ8WVY7
HOGENOMQ8WVY7
Homologs : HomoloGeneUBLCP1
Homology/Alignments : Family Browser (UCSC)UBLCP1
Gene fusions - Rearrangements
Fusion : MitelmanPTPN2/UBLCP1 [18p11.21/5q33.3]  [t(5;18)(q33;p11)]  
Tumor Fusion PortalUBLCP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBLCP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBLCP1
dbVarUBLCP1
ClinVarUBLCP1
1000_GenomesUBLCP1 
Exome Variant ServerUBLCP1
ExAC (Exome Aggregation Consortium)ENSG00000164332
GNOMAD BrowserENSG00000164332
Genetic variants : HAPMAP134510
Genomic Variants (DGV)UBLCP1 [DGVbeta]
DECIPHERUBLCP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBLCP1 
Mutations
ICGC Data PortalUBLCP1 
TCGA Data PortalUBLCP1 
Broad Tumor PortalUBLCP1
OASIS PortalUBLCP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBLCP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBLCP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBLCP1
DgiDB (Drug Gene Interaction Database)UBLCP1
DoCM (Curated mutations)UBLCP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBLCP1 (select a term)
intoGenUBLCP1
Cancer3DUBLCP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609867   
Orphanet
DisGeNETUBLCP1
MedgenUBLCP1
Genetic Testing Registry UBLCP1
NextProtQ8WVY7 [Medical]
TSGene134510
GENETestsUBLCP1
Target ValidationUBLCP1
Huge Navigator UBLCP1 [HugePedia]
snp3D : Map Gene to Disease134510
BioCentury BCIQUBLCP1
ClinGenUBLCP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134510
Chemical/Pharm GKB GenePA142670646
Clinical trialUBLCP1
Miscellaneous
canSAR (ICR)UBLCP1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBLCP1
EVEXUBLCP1
GoPubMedUBLCP1
iHOPUBLCP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:40:36 CET 2017

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